Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00262 ATGTGGACTCAGAAATATGCAAAGGAAAGGAAAGAGGTGGTGGTCGCCAGCAATCAATTGGTCGGAATCGCCATTGACAAGGATAAAGGAAGCCAAAATGCTCTCAAATGGGCTACTGAGAATCTCCTTCAAAAGAGCCAAACCGCCATTCTTATCCATGTCAAGCTCAGATCTTCGTCTCATTCAGATTTGATGTCCAACAATGGCGGTGGCAATGTTTTGGTAAGCAACGAAATCGACCCGAGCACGAGGGATTTGTTCCTTCCTTTTCGATGCTTCTGCACCCGAAAAGATATATTCTGCAAAGACATTGTTATTGAAGATGTAGATGTTGCAAAAGCATTGATTGAATATGTCACTCAAGCTGGAATCGACACTTTGATCGTTGGTACGACGACTAAAAGTGGCTTCTTGAGATTCAAAACGACAGATATTCCCGGCACAATTCTCAAAGGAGCACCAGATTTCTGCAATGTTTATGTCATATCAAGAGGGAAGATCCAAACTATGCGATCGGCCTCACGTCCCGCTCCAACTTCTTCGCCTCTACGAAACTTTTTGCTAAACCAATCCGGTATCAAATCGCAATCATCGGACTCGCAAACGCCTCAGATTCAAAGACCGGAAAAGCCTCCCATCGAACCAGCACGAAGATCACACGAAAACATCGAGTTCAGGTCTCCATTCACTAGGAAAGGTTACAATGGCAAAATGCCAGGGGAAATGAGTGTGCCAGATACTGATATTTCTTTTGTTGGCTCGGGAAGGCCGAGCGTCGACAAATTGTTCCCGACGTACTATGATGCCGTGGATCCAGGACGAATGCCCCCACGACTGTCGAATGGCACCGATGGTGATATATATCATAGCTTTGAATCGCAGCCGTTCGGACGCAAATCATTGGATGTAAACTTTCAAGAATTTTCATCGATCTTCTCGGAAGGCGAAAGATTATCGACTTCGTCACAGAGTATGGTCGAAGTACTAAGCTGCATCCGACATCCGAACATGGTTCTTCTCCTCGGAGCATGCCCCGAGTACGGCTGCTTGGTCTACGAGTTCATGGCAAATGGTAGCTTGGACGATTGCCTCTTTCGTCGTAAAGAAAAGTCGAAACCTCTTTCTTGGCAACTTAGATTCAAAATTGCAGCTGAAATCGGCACGAGCTTGTTGTTCCTCCACCAGACTAAGCCCGAGCCACTCGTGCACCGTGACTTGAAGCCAGCCAACATCTTGCTCGATTTTAACTACGTTAGCAAGATTAGCGACGTTGGTTTGGCTAGGCTTGTTCCCCCATCGGTAGCAGATAGTGTGACACAATATAGAATGACGTCAACTGCTGGCACGTTCTGCTATATCGATCCCGAGTATCAACAAACCGGTATGCTCGGTGTAAAGTCCGACATATATTCTTTAGGAATCATGTTTCTGCAGCTGATTACAGCAAAACCACCCATGGGATTGACTCACCATGTTGGAAGAGCCATTGAGAAAGGGGATTTGTCTGAAGTTCTTGATCCATCTGTTCTTGATTGGCCAGCTGAAGAAACCTTATGCTTTGCAGAGTTGGCTTTAAAATGTGCCGAGTTGAGAAGGAAAGATCGACCCGATCTTAGTAAGACCGTTCTTCCCGAGCTCATCCGATTACGATCGGTAGCCGAAGCGAGCTTGTATTCGTCGGACAAGGATGGCCTTTAG 1698 46.17 MWTQKYAKERKEVVVASNQLVGIAIDKDKGSQNALKWATENLLQKSQTAILIHVKLRSSSHSDLMSNNGGGNVLVSNEIDPSTRDLFLPFRCFCTRKDIFCKDIVIEDVDVAKALIEYVTQAGIDTLIVGTTTKSGFLRFKTTDIPGTILKGAPDFCNVYVISRGKIQTMRSASRPAPTSSPLRNFLLNQSGIKSQSSDSQTPQIQRPEKPPIEPARRSHENIEFRSPFTRKGYNGKMPGEMSVPDTDISFVGSGRPSVDKLFPTYYDAVDPGRMPPRLSNGTDGDIYHSFESQPFGRKSLDVNFQEFSSIFSEGERLSTSSQSMVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLDDCLFRRKEKSKPLSWQLRFKIAAEIGTSLLFLHQTKPEPLVHRDLKPANILLDFNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITAKPPMGLTHHVGRAIEKGDLSEVLDPSVLDWPAEETLCFAELALKCAELRRKDRPDLSKTVLPELIRLRSVAEASLYSSDKDGL 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1752480 1757219 + Carg03869-RA Car12g00262 157878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00262 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Car12g00262 565 Pfam Universal stress protein family 21 145 IPR006016 -
Car12g00262 565 Pfam Protein kinase domain 324 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00262 565 ProSiteProfiles Protein kinase domain profile. 273 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00262 565 MobiDBLite consensus disorder prediction 193 222 - -
Car12g00262 565 MobiDBLite consensus disorder prediction 193 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00262 Car-Chr12:1752480 Car05g00562 Car-Chr5:3296013 6.60E-157 dispersed
Car01g01203 Car-Chr1:11104296 Car12g00262 Car-Chr12:1752480 9.83E-98 wgd
Car12g00262 Car-Chr12:1752480 Car05g00561 Car-Chr5:3293190 5.54E-108 wgd
Car12g00262 Car-Chr12:1752480 Car05g00359 Car-Chr5:2077727 1.45E-31 wgd
Car12g00262 Car-Chr12:1752480 Car09g00466 Car-Chr9:2597386 9.54E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89219 PF00069 Pkinase 2.40E-28 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00262 - - csv:101214468 463.381