Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00272 ATGGATAGTAATCAGTATGGTTCTAACTGGGATGACGTGATTTGTTCGATATGCTTGGATTTTCCTCATAATGCTGTACTTCTTCAATGCTCGTCATATGATAAAGGATGTCGCCCCTTTGTGTGTGACACTGACCATTTACACTCGAATTGTCTTGGTCGTTTTAAAGATGCACACAATACAACTCCCCCATCAACATCTGACGTAGTTCCTCGAATCAATGCCGAGCTGGTGGCACCCGAAGATAATTGCCAATTATGCTGTCCTTTGTGTAGAGGGGATGTGAATGGATGGAAGGTGGTTGATGAGGCTCGCATACATTTGGATAAAAAAAAGCGTTGTTGCGAGGAGGAACAATGTAGATTTATGGGTACATATTTAGAATTGCAACAGCATGCTCAGGTGGAACATCCTCATGCCCGTCCTTCAAAAATCGATCCTGCTCGACAACTAGATTGGGAAAATTTTCAACAATCCTCTGAGATCATCGATGTCTTAAGTACCATTCACTCTGAAGTTCCTCATGGGGTGGTGTTTGGAGACTACGTGATTGAATATGGGGACGATGAAAGTGGGGATGAGTTCGAGGATTTCCCTGGGGATGATGGTAATTGGTGGACCTCTTGTATCTTGTATCAAGTATTTGATAATTTCAGGAATTCACGAAACCGTAGGAGATCGAGAGTTGGTGATACAAGACGGGGAAGTCGCCGTTCGAGTAACGACTTGTTGAATTCCGATGACAGTTTTGTGGCCTCGGTAGAATTTTCAGAGTACGGCGTAGAAGATATTGATGATGAAATTGTGAGTACAAATGTCTCTTCAAGGGGTAATTCCAACCATAGGAGTTCCCGAAGACGTCGCTCCCGCTTTTACGACAACTAG 885 43.5 MDSNQYGSNWDDVICSICLDFPHNAVLLQCSSYDKGCRPFVCDTDHLHSNCLGRFKDAHNTTPPSTSDVVPRINAELVAPEDNCQLCCPLCRGDVNGWKVVDEARIHLDKKKRCCEEEQCRFMGTYLELQQHAQVEHPHARPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPHGVVFGDYVIEYGDDESGDEFEDFPGDDGNWWTSCILYQVFDNFRNSRNRRRSRVGDTRRGSRRSSNDLLNSDDSFVASVEFSEYGVEDIDDEIVSTNVSSRGNSNHRSSRRRRSRFYDN 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1807665 1809088 - Carg03879-RA Car12g00272 157888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00272 294 MobiDBLite consensus disorder prediction 272 294 - -
Car12g00272 294 Pfam Protein of unknown function (DUF1644) 11 167 IPR012866 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00272 - - - csv:101205331 481.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00272 Car-Chr12:1807665 Car15g00658 Car-Chr15:3657191 9.67E-55 dispersed
Car12g00272 Car-Chr12:1807665 Car05g00574 Car-Chr5:3363771 2.00E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g212 . . . . Bpe02g01620 . . . . Cmo12g00240 . Cma05g00633 . Car12g00272 . Cpe07g00249 . Bhi04g01076 Tan02g2640 . . Hepe10g0313 . Lcy13g1340 . . . . . . . Cone4ag1853 Cone7ag1757 . . . . . . . Blo18g00198 . Bda13g01292 . . Bma01g01308 Bma02g00049 . . . . Cma12g00288 . . . . . . . . . . . . . . . . . . . . Chy03g01188 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002959 2 3 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 8 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00272 Car_Chr12 FPKM 158.190369 164.854843 0.493411 0.666974 1.828691 1.121332 2.195253 0.0 0.0 0.0