Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00284 ATGGCTGTCAAAACAGCGCAATCATTTAGAGATCGGACGCATGAATTCCAGAACATAGCAGAAAGGCTAAAGAAGTCTTTCTCATCTGGCACTGGAACAACAGGACCAAGTGTTGGTTTAAAATCAGAAGAGCAGCGTTCTGCTGTGGCTCTGCAGTCAGAATTTAATAAGAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACGTCCCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCACTTATTAAGCAGGACATTACAACATTGAACTCCGCAGTTGTAGATCTTCAGCTTCACTGCAACTCTAGACATGAAAATGGAAATATGTCCAGCGATACTACTAGTCATTCAACCACTGTGGTGGATGATCTTAAGAATCGCCTTATGAGCACAACTAAAGAATTTAAAGAAGTTCTAACTATGCGAACAGAAAATTTGAAGGTTCATGAGAATAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTATGCGCCAACGCCCTTTAGCTTCCAGGTCCACTGCTGGTGCCTCAAGCGCACCCCCTCCTCCGTGGGCCAAGCCGCCTACATCTTTTTCCAAAACATCTCCCGGGAAGCAGGTAGATGGGGAGAGTCAACCATTGTTACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACTATCCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCAATCAGGATTGACGAGAATATGGACGATTCTCTGGCAAATGTGGAGGGGGCACAGGGAGCTTTGCTCAAGTATCTAAACAACATATCTTCAAATAGGTGGTTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTTATGGTCTTCCTATTTTTTGTGGCATAG 1029 42.86 MAVKTAQSFRDRTHEFQNIAERLKKSFSSGTGTTGPSVGLKSEEQRSAVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLHCNSRHENGNMSSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFMRQRPLASRSTAGASSAPPPPWAKPPTSFSKTSPGKQVDGESQPLLQQQQQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDSLANVEGAQGALLKYLNNISSNRWLMIKIFFVLIFFLMVFLFFVA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1869253 1874135 + Carg03891-RA Car12g00284 157900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00284 342 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Car12g00284 342 Pfam SNARE domain 286 338 IPR000727 -
Car12g00284 342 MobiDBLite consensus disorder prediction 168 247 - -
Car12g00284 342 MobiDBLite consensus disorder prediction 170 201 - -
Car12g00284 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 250 312 IPR000727 -
Car12g00284 342 ProSitePatterns Syntaxin / epimorphin family signature. 256 295 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car12g00284 342 MobiDBLite consensus disorder prediction 214 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00154 Car-Chr4:847175 Car12g00284 Car-Chr12:1869253 7.15E-81 dispersed
Car04g01051 Car-Chr4:6024702 Car12g00284 Car-Chr12:1869253 1.94E-95 dispersed
Car12g00284 Car-Chr12:1869253 Car17g01008 Car-Chr17:8021846 1.95E-06 dispersed
Car12g00284 Car-Chr12:1869253 Car05g00589 Car-Chr5:3439963 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00284 K08490 - csv:101203633 511.146