Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00287 ATGGATGTTCCCTCGGTGGAACTAAATTGTGAAAGCGAAGAAGACTCTTACCCTTTATTAATGGCCCAGCCAGAAAATATCAGCAGCAGTGAGCATATCATTAACATAACTGGTACTGGTGATTCTGCTCCATCTAGTTTGCCCCATGGTAGGAATTCAAATGGCTTAAATTCATCACAGCCTGAAGATAGACCTTCGAGTAGTACACGAGTTCCTTCGTCTCAACCTTCAATTTCTACTACTGGATCAAATTCTAGAAATTCTTCATTCATAAGAAGAGGAGATTCGCGGCGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATAGTATTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGCATGGATTGTGGGATATGCATCTGGGTGTGGTGCGACACTTCCTCTTCTCTATTGGCGTTATCGACACCGTAATCAGGCTTCAGAACAAGATTCTCTTCAACCTAGTCAGAATTCTAATCGCATTAATGTTCCTGCTGGGCCATTCTCTGTTTCAGTTTCTAGGGCATCAGAAGGCGAAGAACTTCATCATCCTGCCCCATCTCCCAGAGGCAGTGTAGGGTCAGGATTACTGACAGCAAGGGTAAAAGTTTTGGTTGAATATTTCAAGATGGGTCTGGATTGCTTCTTTGCTATTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGCTGCCTACCTTGTATAATTTCCATCCTTGGCTTTAGAGAGGACATGACACAGACCCGAGGAGCCACAACAGAATCTATTAATGCATTGCCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAGATGATAGAGAAAACAACTCCGGGGCTGGTGAAGGAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCGAAATATGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTCCACAAGGAATGTGTAGATAAATGGTTGAAGATCAACGCCCTGTGCCCGCTTTGCAAAAACGAGGTCGGTGAGAGTATCGTTGGCTCTCTTGAGGGGACAAATAGACAACAACAGGGTGATTAG 1281 43.01 MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQPEDRPSSSTRVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQPSQNSNRINVPAGPFSVSVSRASEGEELHHPAPSPRGSVGSGLLTARVKVLVEYFKMGLDCFFAIWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDMTQTRGATTESINALPTYKFKLKKSRSGDDRENNSGAGEGGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNEVGESIVGSLEGTNRQQQGD 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1879624 1883329 - Carg03894-RA Car12g00287 157903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00287 426 MobiDBLite consensus disorder prediction 325 345 - -
Car12g00287 426 Pfam Ring finger domain 364 405 IPR001841 -
Car12g00287 426 MobiDBLite consensus disorder prediction 22 90 - -
Car12g00287 426 MobiDBLite consensus disorder prediction 1 101 - -
Car12g00287 426 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00937 Car-Chr1:9049200 Car12g00287 Car-Chr12:1879624 3.30E-52 dispersed
Car09g00929 Car-Chr9:5723236 Car12g00287 Car-Chr12:1879624 4.67E-32 dispersed
Car12g00287 Car-Chr12:1879624 Car14g01816 Car-Chr14:14162160 4.09E-51 dispersed
Car12g00287 Car-Chr12:1879624 Car05g00592 Car-Chr5:3450397 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00287 - - cmax:111496220 814.298