Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00289 ATGAAAGAACTTAAGTTTGCCGTCAGAATCACACGCTCCCAGTCTAATTCCTTGAGTAGACTGGAGGCTACTTCACCCTCGTTACAAGTTTCACTAAAAAAACTGCGCAAACGCGATCATGCCGAAAACTCTGAACGAGCACAACTGGATGGAAGTAATGCTCCTACAACTATCACTATTGGCCTTCGGCGCAAAAGAAGAGCAGTGCTCAAGGATGTTACTAACATGTCCAGTGAGAGCAATAATCTGGGTTGCTTGCATGCTTCTAAAATTCAGGTACATGAGGTCATACAGATCGAATCCCTTGAAGATTCACCCATTAAAAGGACGGCTGAATCACAAGTTACCTTCCCAATGATGAGGCCAGACAAAAAAGAGACAGCACAGAAGAACAAGTTTCAGACTGTCATAGGATGCACAAATGTTGCGTTTCCCAAGTCTTCGGGATTAAAAGACCACCAAATGAAAGATGAGGCTCGAGTTTGTGATAAACTAAACCATCTTGGTACATCGGATGCTGTTTCAATCTCAGAAGATCCTCAAGCATGCACACTATATGCCCATAACATATATGATATCAATCGTGTAATAGAGCTTGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATTGATTGGTTAGTTGAGGTTTCTGAAGAATATAAACTCGTTTCTGACACGCTTTACCTCACCGTGAATCTCATCGATCGATTTCTCTCTCAAAGTTGCATTGAAAGGCATAGATTACAACTCCTTGGCGTCAGTTGCATGTTAATCGCCTCTAAATATGAAGAAGTATGTGCACCATTTGTGGAAGAGTTTTGCTGCATCACGGACAACACCTATACGAGAGGAGAGGTACTAAAAATGGAGGGTGAAGTACTGAACTTGCTCAACTTTCAGCTCTCTGTTCCCACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACCGGCTTCTTGCAAGGAACCTCGCGACAGGTTCGAGCATTTGACGAATTATCTAGCAGAATTGACTCTTGGCGAGTACAGCTTTCTGAGGTTTCTGCCATCAGCAGTGGCTGCATCTGTGGTGTTCTTAGCCAAATGGATTCTGAATCAACCGAATAACCCATGGAATCCAAGTCTAGAACAGTATACAAATTACAGTATCTCCCAGCTAAAAGCTCCAGTTCTTGCCTTAGAACATCTAAGATTGAACTCGTCAACTTGCCCTTTCAACGCCATCTTTCACAAGTACAGACAACACAAGTTTGGAAGCGTGGCGACTTTAACCCCCACAATACCAGTTCTCTCAGCTTTCCAAAACCAGACAGATTCCTAA 1365 42.42 MKELKFAVRITRSQSNSLSRLEATSPSLQVSLKKLRKRDHAENSERAQLDGSNAPTTITIGLRRKRRAVLKDVTNMSSESNNLGCLHASKIQVHEVIQIESLEDSPIKRTAESQVTFPMMRPDKKETAQKNKFQTVIGCTNVAFPKSSGLKDHQMKDEARVCDKLNHLGTSDAVSISEDPQACTLYAHNIYDINRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFLSQSCIERHRLQLLGVSCMLIASKYEEVCAPFVEEFCCITDNTYTRGEVLKMEGEVLNLLNFQLSVPTTKTFLRRFVQVAPASCKEPRDRFEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLAKWILNQPNNPWNPSLEQYTNYSISQLKAPVLALEHLRLNSSTCPFNAIFHKYRQHKFGSVATLTPTIPVLSAFQNQTDS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1889539 1895348 - Carg03896-RA Car12g00289 157905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00289 454 Pfam Cyclin, C-terminal domain 318 440 IPR004367 -
Car12g00289 454 ProSitePatterns Cyclins signature. 220 251 IPR006671 -
Car12g00289 454 Pfam Cyclin, N-terminal domain 190 316 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00540 Car-Chr8:3380090 Car12g00289 Car-Chr12:1889539 3.21E-111 dispersed
Car12g00289 Car-Chr12:1889539 Car15g00608 Car-Chr15:3365078 5.56E-93 dispersed
Car12g00289 Car-Chr12:1889539 Car17g00774 Car-Chr17:6828462 4.15E-111 wgd
Car12g00289 Car-Chr12:1889539 Car04g01296 Car-Chr4:7500349 2.45E-133 wgd
Car12g00289 Car-Chr12:1889539 Car09g00418 Car-Chr9:2316309 1.43E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00289 K06627 - csv:101211578 708.753