Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00295 ATGTCGACCGCCGCCGTGATCGCACATTCTAGCTCCTGGTCTCGCGCTCTCATCAATATCTCTCCCTACACTTTCTCCGCCGTCGGTATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATAACGGGAAGCAGTTTGATTGGTGCCGCGATCAAAGCTCCTCGTATTACTTCGAAGAATTTGATCAGTGTAATTTTCTGTGAAGCTGTTGCTATATACGGTGTCATTGTTGCCATCATCTTACAAACCAAGTTAGAGAGTGTTTCAGCGTCTCAGATTTATGCCCCCGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCTAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCGTTATCAGATGCCCAAAACTCCTCTCTTTTTGTGAAAATTCTTGTAATTGAGATCTTTGGCAGTGCGCTCGGGTTGTTCGGAGTGATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA 549 48.27 MSTAAVIAHSSSWSRALINISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1945666 1948880 + Carg03902-RA Car12g00295 157911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00295 182 Gene3D - 23 177 IPR035921 -
Car12g00295 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Car12g00295 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Car12g00295 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Car12g00295 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00295 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00295 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00295 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00295 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Car12g00295 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Car12g00295 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Car12g00295 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Car12g00295 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00295 Car-Chr12:1945666 Car12g00400 Car-Chr12:2556533 1.37E-21 dispersed
Car12g00295 Car-Chr12:1945666 Car04g01259 Car-Chr4:7305690 2.18E-109 wgd
Car12g00295 Car-Chr12:1945666 Car05g00344 Car-Chr5:1977152 3.47E-120 wgd
Car12g00295 Car-Chr12:1945666 Car09g00416 Car-Chr9:2303645 5.44E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00295 K03661 - csv:101221052 328.561