Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00302 ATGCTCAATGGCAAATTCCGTAATTATCCCCCAACCATAAGGGCTTCCTTGTACCCTTCCTTCCATATAAGCTCCCACTCCTCCTCCACACCGCCCTCAGCCATCTCTCTCCCTACAAACACATTCACAATGCAGACCGCCGCCGTCATCTTCTTCTCGGTGCTTCTCTCCGCCGCCGCCTTCCATCCCGCTCTCGCCCTCGTCGACGGGTATTTGCCGAATGGCGATTTTGAGAGGGGACCAAAGGCGTCGGAAATGAACGGCACGGTGGTGAAAGGGCAGTTTGCGATACCGGCGTGGGAAATTTCAGGGTTCGTTGAGTACATAAAATCCGGTCAGAAACAAGGCGACATGTTGCTGGTGGTGCCGGAGGGGGCGTTCGCCGTCCGGCTAGGGAACGAGGCGTCGATCAAACAGAAGATCAAAGTGGTTAAAGGAGTTTACTATTCCATAACGTTCAGCGCCGCCCGTACCTGCGCTCAAGAGGAGCGGCTGAACATCTCCGTCGCGCCGGACTGGGGGGTTCTGCCGATGCAAACCCTTTACAACAGCAATGGGTGGGACCTGTACGCTTGGGCCTTCCAAGCCACGGCGGACGAGGTGGTTATTCTGATCCATAACCCTGGCGAGGAGGAAGACCCGGCTTGTGGTCCCCTCATCGACGCCATTGCCATTAAGACTCTCTACCCTCCCAAGGCCTCTAATGGTCCATACGTGTTCCCCAACGCATCGTCGGGAGTTTTGGTCCCACCCAACATCGAAGACGACCACTCTCCGATCCCCGGCTGGATGGTGGAGTCTCTCAAGGCCGTTAAATACATAGATTCCGATCACTTCTCCGTCCCCAGCGGGAAGCGCGCCGTCGAGCTCGTCGCCGGAAAAGAAAGCGCCATAGCTCAGGTCGTCCGTACGGTTCCAGGGAGAACATACATCCTCTCGTTTGTCGTCGGCGATGCAAGCAACTCGTGCGAAGGATCCATGGTCGTCGAAGCGTTCGCCGGTAAAAACACTCTGAAAGTGCCGTACCAGTCAAAAGGCAACGGCGGATCGAAACCGGCGGCGCTGAAATTCGTGGCGGAGTCGACAAGAACACGTATTATGTTCCTCAGCACATTCTACACCATGCGAAGCGATGATTTCTCGTCGCTGTGTGGGCCGGTGCTCGATAAGGTGAAATTGTTGAGCGTTCGAGGAAGAAAATAA 1203 55.61 MLNGKFRNYPPTIRASLYPSFHISSHSSSTPPSAISLPTNTFTMQTAAVIFFSVLLSAAAFHPALALVDGYLPNGDFERGPKASEMNGTVVKGQFAIPAWEISGFVEYIKSGQKQGDMLLVVPEGAFAVRLGNEASIKQKIKVVKGVYYSITFSAARTCAQEERLNISVAPDWGVLPMQTLYNSNGWDLYAWAFQATADEVVILIHNPGEEEDPACGPLIDAIAIKTLYPPKASNGPYVFPNASSGVLVPPNIEDDHSPIPGWMVESLKAVKYIDSDHFSVPSGKRAVELVAGKESAIAQVVRTVPGRTYILSFVVGDASNSCEGSMVVEAFAGKNTLKVPYQSKGNGGSKPAALKFVAESTRTRIMFLSTFYTMRSDDFSSLCGPVLDKVKLLSVRGRK 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1979282 1982369 + Carg03909-RA Car12g00302 157918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00302 400 Pfam Protein of unknown function (DUF642) 254 393 IPR006946 -
Car12g00302 400 Pfam Protein of unknown function (DUF642) 70 226 IPR006946 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00302 - - - csv:101219952 669.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00339 Car12g00302 CCT
Car05g00339 Car12g00302 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00210 Car-Chr1:1145906 Car12g00302 Car-Chr12:1979282 8.51E-108 dispersed
Car07g00099 Car-Chr7:616289 Car12g00302 Car-Chr12:1979282 2.81E-114 dispersed
Car12g00302 Car-Chr12:1979282 Car14g00902 Car-Chr14:5378817 7.71E-134 dispersed
Car12g00302 Car-Chr12:1979282 Car05g00339 Car-Chr5:1947649 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g438 Blo01g01373 . Bda01g00729 . Bpe02g01237 . . . Cmo05g00416 . . . . Car12g00302 Sed01g1353 . . Bhi04g01003 Tan02g2698 Cmetu03g1011 . Hepe10g0273 . Lcy13g1759 . . . . . . . . . . . . . . Cme03g01646 . . Bda01g00992 . . . Bma01g01286 . . . . . . . Car05g00339 . . . . . . . . . Cla08g01309 Cam08g1769 Cec08g1350 Cco08g1471 Clacu08g1465 . Cre08g1252 Lsi08g01173 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004712 2 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 5 0 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00302 Car_Chr12 FPKM 1.822917 1.742422 3.683083 3.041755 3.567792 3.509767 4.144061 2.012804 2.123954 3.363805