Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00303 TTTTGGTTTCATTCCTTCGTTCAGGCGCTGCCGAGTCAGGCCACCGTAGATTACCCTAGCTTCAAGCTTGTAATAGTCGGAGACGGTGGAACAGGGAAGACTACCTTTGTTAAACGTCATATAACTGGAGAGTTCGAGAAGAAATATGAACCGACAATCGGAGTTGAAGTTCATCCACTGGACTTCTTTACGAACTATGGAAAGATAAGGTTTTACTGCTGGGACACCGCTGGTCAGGAGAAGTTTGGTGGACTTAGAGATGGTTACTATATTCATGGACAGTGTGCCATCATCATGTTTGATGTCACTGCTCGTTTAACGTACAAAAACGTCCCAACATGGCACCGAGATCTCTGCAGGGTTTGTGAGAACATACCCATCGTGTTGTGTGGAAACAAGGTCGATGTGAAAAACAGACAGGTTAAAGCAAAGCAGGTGACCTTCCACAGGAAGAAAAATCTCCAGTACTACGAAATCTCTGCAAAGAGTAATTACAACTTCGAGAAGCCTTTCTTGTATCTTGCTAGAAAGCTTGCTGGGAATACGGAGCTCCACTTCGTCGAATCACCTGCCCTTGCTCCTCCTGAAGTCGAAATTAACTTGGCGGAACAAGCACAGCACGAAGCAGAGTTGGCACAAGCTGCTGCACAACCTCTTCCTGATGAGGATGACGATGCTTTTGAGTGA 687 45.85 FWFHSFVQALPSQATVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNYGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVESPALAPPEVEINLAEQAQHEAELAQAAAQPLPDEDDDAFE 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1983734 1986685 + Carg03910-RA Car12g00303 157919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00303 228 Pfam Ras family 22 178 IPR001806 GO:0003924|GO:0005525
Car12g00303 228 ProSiteProfiles small GTPase Ran family profile. 14 178 IPR002041 GO:0003924|GO:0005525|GO:0006913
Car12g00303 228 ProSiteProfiles small GTPase Ras family profile. 12 212 IPR001806 GO:0003924|GO:0005525
Car12g00303 228 MobiDBLite consensus disorder prediction 208 228 - -
Car12g00303 228 ProSiteProfiles small GTPase Rab1 family profile. 15 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00303 K07936 RAN; GTP-binding nuclear protein Ran - csv:101219711 418.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00338 Car12g00303 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00433 Car-Chr11:2426624 Car12g00303 Car-Chr12:1983734 8.47E-146 dispersed
Car12g00303 Car-Chr12:1983734 Car02g01349 Car-Chr2:8929864 2.10E-26 dispersed
Car10g00533 Car-Chr10:2669188 Car12g00303 Car-Chr12:1983734 3.95E-145 wgd
Car12g00303 Car-Chr12:1983734 Car05g00338 Car-Chr5:1944076 4.73E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g440 Blo01g01374 Blo12g01084 Bda01g00730 Bda03g00063 . . Bma04g00061 . Cmo05g00415 . . Cma05g00404 . Car12g00303 . Cpe07g00282 . . . . . . . . . . . . . . . . . Cone17ag1036 . . . . . . . . . . Bpe04g00049 . . . . . . . . Car05g00338 Cpe11g00344 . . . . . . . . Cla08g01310 Cam08g1770 Cec08g1351 Cco08g1472 Clacu08g1466 . Cre08g1253 Lsi08g01174 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000590 3 3 3 1 2 4 3 4 4 1 4 4 3 4 4 6 4 5 3 4 4 2 3 3 1 3 4 6 5 4 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00303 Car_Chr12 FPKM 14.398305 12.604551 7.343921 12.198847 6.136909 4.927284 8.03102 10.927963 11.731974 14.13445