Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00307 ATGACGAAGAAGAAGAATCCTTTGGTTTTTCTGGATGTCTCAATTGACGGAGACCCAAGGGAAAAAATGGTTTTTGAGCTTTTTTATGACCACGCTCCAAAAACAGCCGAGAATTTTCGTGCTCTGTGTACAGGAGAGAAAGGCATTGGTCCCAAAACTGGAAGACTACTACATTACAAGGCATCTTTTTTTCATCGGATTATTAAAGGCTCCATGGCACAGTCAGTTACCCTTGTTTATGCTGTAGGCTACAGGGCTGACGGTCAAGAATCGTTTTCTTGTGATGTAGTTTTAAGGCTGGAGATTTTGTCAAACGAGATGGTATGCATTTTCTTTGGCTTGTTCATTTTTCTCATTTTATTGTCTGTTGAAGTTATGTTTACTGTTCTTATTCTTTTCACATGTACTGTTGGAGAGAGCATATATGGTGGAAAGTTTCCAGATGAACCTCCTCGATTAAAACATGATGGACCTGGTCTTCTATCAATGTCAATTGCTGACCGGGACACTTTAGGCTCGCATTTTCTTATCACATTTAAGGCTAATAGCCATCTTGACAGGAAGCATGTAGTATTTGGAAAGCTTGTCCAAGGTTTTGATGTACTGAAAAAGATAGAAAGCGTGGATGTAGAAGATGGCGTTCCAACTGTTACGGTGAAAATTGTCAATTGTGGCGAATTTAACGAGGAAAAAAGAAAGGTGAATAAAATGAAGACAGGAAAGAATGCTTCTTCAGACGATGATAGTCATGATGAAAAGAGACGAGGAAAGCAGAAAAAACCAAGGGAGAGGAAGAGGAGGAAGAAAAGATACCACACGTCTGAGTCAGATAGTTCTTCCGATTCAGAATTAGACTATGACTCTGAGAGTGATACTGACACCGATTCGTCGTCGTCATCTTCTGAAAGTTCTTCAAGTGATGACAGGTCTAGAAAGAGAAAGAGGACTTCTAAGAGAGGCAAATATAGGCGTGGGAGAAGAAAGGATAAAAGACGTGACAGAAAGAGACGGAAGCATGATAAGAAGTCAAAGAGAAAATCTAAAAGGGACTTGGACAGTCTTACTGATACTGAAAGTGATAGCAAAAGCAGAAGCACTTCTGAGCAAGATGGCCTAGATGTTCAAGGGAAAGATCTAAACCGTCAAGGCTTGTCAGTGAAAGCTGCTGAAGATGTACCTCAAGTCTCAGATACCCGCCATAGAAGAAGAGGAGAGGCAGATATGGTGGAAAAGGATGCGGACGGATCCCCGAAGGAGAATGGTGAGCGAAGCCGCAATGGCATTGCTGCGGTGGATTCTAAATCTGACAGAAGCTCAGAAAGACAACCTGATGTTCTAGACGACCACCCTGGAAAATCTAGGAGTCGAAGCATTAGTCCTAGAAGGACGATGAGTAAGAGTATGAGCATTAGTCCAAGGAAGAGTCGCAGCAAGAGCCGTAGTGTTAGCCCCAAACGAAGTATGAGCAGGAGTCGAAGCCCTCAGGCACAATTGAGGAGCAGGAGCAAGAGCATCAGCAGAAGTCCTATTCGAAATAGTAGCAGGAGCGCCAGCAGAAGTCCTGTTCGAAATGGTAGTAGGAGCATCAGCAGAAGTCCTGTTAGAAATGGTAGCATGAGCCCGGGTAGAAGTATTAGCAGGAGCCCAGATAGGGTAAGGAAAGGTAGGAGTATCAGCAGAAGCCCCCCATTACGAACCAGGTCTCAAAGAGGTGTCAGCAGAAGCCCCTTGAGATCCAATCCACATAGAAGTCCAAGCAGGAGTCCACCTAGAAGAGCCTCTAGGAAATCAATTAGTAGGAGTCCTGCAAGAGTTTCCAGAAGTGCAAGCAGAAGTCCAGTAAGGTCCTCTCGTCAGAGCTTGAGCAGAAGCTCAGGTAGGGCACCTTCTAGGAAAAGTATCAGTCAAAGTCCTCGAGCACCTGTTAGGAATCGAAGGAGCTATTCTAGGAGTCCTAGTCCCATCCGAAGGCCAAAGTCACCAGTTTCTGATAGAGGTAGAAGTGCATCAAGAAGTGTTTCTCCAGAAGGGTCTCCAAAGCGCATCAGGAGGGGCCGTGGTTTTAGTGAGCGATATTCATTTGCTCGAAGGTACAGAACACCCTCAAAGTCTCCTGTCAGGTCATACCGTTACAGTGGAAGAGGTGAACGTGACAGATATTCAAGTTACAGAAGGTATTCTCCTAGGCGTTACCGAAGCCCTCCTAGAGGAAGGTCTCCGTTAAGATACAGAAACAGACGAAGCAGAACTCCCTCTGCATCCCGTAGTCCTCGTTACCGCAGTCGTCGTAGTCGCCGTTATAGCCGTAGCCGAAGCCCAATCAGGAGCCGTTCCCCAGTCGAGAGATCCAGGTCTCGTGTGTCTCCTAGAGTAGTTGGGCGGAAATCTCCTTCAAGGAGCAGATCCCCATCGAAATCAAGGTCCCCTGCTGACTCGCCATCACCCAGAAGGAGTAGCAGAGATCGATCCAGGTCATCACCTTCTGGTAGCCCAGATGGGAAGAAGGGTCTGGTTTCTTACGGTGATGGATCTCCAGATTCAGATAGGTGA 2550 45.84 MTKKKNPLVFLDVSIDGDPREKMVFELFYDHAPKTAENFRALCTGEKGIGPKTGRLLHYKASFFHRIIKGSMAQSVTLVYAVGYRADGQESFSCDVVLRLEILSNEMVCIFFGLFIFLILLSVEVMFTVLILFTCTVGESIYGGKFPDEPPRLKHDGPGLLSMSIADRDTLGSHFLITFKANSHLDRKHVVFGKLVQGFDVLKKIESVDVEDGVPTVTVKIVNCGEFNEEKRKVNKMKTGKNASSDDDSHDEKRRGKQKKPRERKRRKKRYHTSESDSSSDSELDYDSESDTDTDSSSSSSESSSSDDRSRKRKRTSKRGKYRRGRRKDKRRDRKRRKHDKKSKRKSKRDLDSLTDTESDSKSRSTSEQDGLDVQGKDLNRQGLSVKAAEDVPQVSDTRHRRRGEADMVEKDADGSPKENGERSRNGIAAVDSKSDRSSERQPDVLDDHPGKSRSRSISPRRTMSKSMSISPRKSRSKSRSVSPKRSMSRSRSPQAQLRSRSKSISRSPIRNSSRSASRSPVRNGSRSISRSPVRNGSMSPGRSISRSPDRVRKGRSISRSPPLRTRSQRGVSRSPLRSNPHRSPSRSPPRRASRKSISRSPARVSRSASRSPVRSSRQSLSRSSGRAPSRKSISQSPRAPVRNRRSYSRSPSPIRRPKSPVSDRGRSASRSVSPEGSPKRIRRGRGFSERYSFARRYRTPSKSPVRSYRYSGRGERDRYSSYRRYSPRRYRSPPRGRSPLRYRNRRSRTPSASRSPRYRSRRSRRYSRSRSPIRSRSPVERSRSRVSPRVVGRKSPSRSRSPSKSRSPADSPSPRRSSRDRSRSSPSGSPDGKKGLVSYGDGSPDSDR 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1995781 2002358 + Carg03914-RA Car12g00307 157923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00307 849 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 226 IPR002130 GO:0000413|GO:0003755
Car12g00307 849 MobiDBLite consensus disorder prediction 434 455 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 795 813 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 457 477 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 599 656 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 346 367 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 393 421 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 710 725 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 561 587 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 232 256 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 486 545 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 729 772 - -
Car12g00307 849 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 225 IPR002130 GO:0000413|GO:0003755
Car12g00307 849 MobiDBLite consensus disorder prediction 232 849 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 677 697 - -
Car12g00307 849 MobiDBLite consensus disorder prediction 312 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00307 K09566 PPIG; peptidyl-prolyl isomerase G (cyclophilin G) [EC:5.2.1.8] - csv:101210345 712.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00336 Car12g00307 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00307 Car-Chr12:1995781 Car17g01141 Car-Chr17:8769026 1.53E-15 dispersed
Car12g00307 Car-Chr12:1995781 Car05g00336 Car-Chr5:1928178 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g446 . . . . Bpe02g01238 . . . Cmo05g00413 Cmo12g00276 . Cma05g00402 . Car12g00307 . Cpe07g00284 . Bhi04g00994 . . . Hepe10g0270 . . . . . . . . . Cone4ag1806 Cone7ag1714 . . . . . Cme03g01642 Blo17g00026 Blo18g00035 Bda01g00993 . . . Bma01g01285 Bma02g00030 . . . . Cma12g00325 . Car05g00336 Cpe11g00342 . . . . . . . . Cla08g01312 Cam08g1772 Cec08g1354 Cco08g1474 Clacu08g1468 . Cre08g1255 Lsi08g01176 . Chy03g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000569 2 5 4 4 2 3 5 3 3 3 3 3 5 3 2 5 3 6 6 3 3 4 3 3 1 2 2 8 4 2 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00307 Car_Chr12 FPKM 4.357143 6.689235 0.0 1.549811 16.630503 14.521914 13.298843 2.138425 0.921486 2.124122