Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00309 ATGAGCCGCCCTGGAGATTGGAATTGCAGGTCATGCAACCATCTCAACTTCCAACGGAGGGACTCCTGCCACCGCTGTGGCGACCCTAGGGCTGACTTCGGCGGCGCTGGCTACGGCGGTGGAAGAGGTGGTTCTTCCACCTTTGGGTTCACCACCGGCCCCGACGTCCGCCCTGGCGATTGGTACTGCGCTGTCGCTAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAGGATGAAGCTTCCGCCGCCGCCTACGACGGCGATTTGTCCCGAATCAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCAGATTGCAACGAGCATAACTTTGCGAGTCGAAGGGAATGCTTCAAATGCAATGCGCCGAGGGATTCCAACAGCAAGTCACCATACTCGTAG 465 58.28 MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSTFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFKCNAPRDSNSKSPYS 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2013555 2014726 + Carg03916-RA Car12g00309 157925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00309 154 ProSitePatterns Zinc finger RanBP2-type signature. 61 82 IPR001876 -
Car12g00309 154 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Car12g00309 154 ProSiteProfiles Zinc finger RanBP2 type profile. 116 147 IPR001876 -
Car12g00309 154 Pfam Zn-finger in Ran binding protein and others 116 145 IPR001876 -
Car12g00309 154 Pfam Zn-finger in Ran binding protein and others 3 29 IPR001876 -
Car12g00309 154 Pfam Zn-finger in Ran binding protein and others 57 86 IPR001876 -
Car12g00309 154 ProSitePatterns Zinc finger RanBP2-type signature. 120 141 IPR001876 -
Car12g00309 154 ProSiteProfiles Zinc finger RanBP2 type profile. 57 88 IPR001876 -
Car12g00309 154 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00309 - - - csv:101219235 301.212
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00333 Car12g00309 CCT
Car05g00333 Car12g00309 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00381 Car-Chr7:1926873 Car12g00309 Car-Chr12:2013555 2.68E-06 dispersed
Car08g00559 Car-Chr8:3707693 Car12g00309 Car-Chr12:2013555 1.46E-52 dispersed
Car11g00440 Car-Chr11:2462188 Car12g00309 Car-Chr12:2013555 3.73E-09 dispersed
Car12g00309 Car-Chr12:2013555 Car10g00314 Car-Chr10:1540470 9.62E-07 dispersed
Car01g00117 Car-Chr1:602849 Car12g00309 Car-Chr12:2013555 1.21E-12 wgd
Car12g00309 Car-Chr12:2013555 Car14g01179 Car-Chr14:10306138 6.71E-11 wgd
Car12g00309 Car-Chr12:2013555 Car05g00333 Car-Chr5:1910463 1.36E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g452 Blo01g01377 . Bda01g00734 . . Bpe02g00572 . . Cmo05g00409 Cmo12g00277 . Cma05g00396 . Car12g00309 Sed01g1363 Cpe07g00286 . Bhi04g00986 Tan02g2707 Cmetu03g1356 . . . Lcy13g1766 . . . . . . . Cone4ag1804 Cone7ag1712 . . . . . Cme03g01640 . . . . . . . . . . . . Cma12g00327 . Car05g00333 Cpe11g00340 . . . . . . . . Cla08g01315 Cam08g1775 Cec08g1357 Cco08g1477 Clacu08g1471 . Cre08g1258 Lsi08g01180 . Chy03g01140 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001025 2 6 2 1 2 1 5 2 2 2 1 1 4 3 3 5 2 4 4 1 2 3 3 2 3 2 3 5 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00309 Car_Chr12 FPKM 13.65075 14.004187 27.486736 28.191364 15.337922 12.98739 13.88916 35.748291 33.629757 30.996496