Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00311 ATGCAGGAGCCGGCGACGAGTTCCGCCGCCGCTAGTTCCTTGCCTTCGAGCAGCGAGAGGTCGTCCAGTTCGGCTCTTCACCTCGAAGTCAAAGAAGGTATGGAGAGCGATGAAGAGATCCGGAGAGTGCCGGATATGGTTGGTGAATCAGCCGGAACATCCGCCTCCGGGAGGGACACCGGTTCAGTCGCCGGTCCGGACCGGGTTCAGGTGTCTCGGGATGGTCAAAGGAAGAGAGGGAGAAGTCCGGCTGACAAAGAAAGCAAGAGACTGAAGAGATTGCTGAGGAATAGAGTATCGGCACAGCAAGCGAGGGAGAGAAAAAAGGCGTATTTGAATGATTTAGAGATAAAGGTGAAGGATTTGGAGAAGAAGAACTTGGAACTTGAAGAAAGGCTTTCCACCTTACAAAATGAGAATCAAATGCTTAGACAAATATTGAAGAACACAACGACAAGTCGGAGAAGTGGGGAATGA 477 50.94 MQEPATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPDMVGESAGTSASGRDTGSVAGPDRVQVSRDGQRKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLNDLEIKVKDLEKKNLELEERLSTLQNENQMLRQILKNTTTSRRSGE 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2022036 2023035 + Carg03918-RA Car12g00311 157927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00311 158 MobiDBLite consensus disorder prediction 1 24 - -
Car12g00311 158 MobiDBLite consensus disorder prediction 30 45 - -
Car12g00311 158 Pfam bZIP transcription factor 86 147 IPR004827 GO:0003700|GO:0006355
Car12g00311 158 MobiDBLite consensus disorder prediction 71 107 - -
Car12g00311 158 MobiDBLite consensus disorder prediction 1 107 - -
Car12g00311 158 Coils Coil 84 146 - -
Car12g00311 158 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 150 IPR004827 GO:0003700|GO:0006355
Car12g00311 158 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 92 107 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00331 Car12g00311 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00311 Car-Chr12:2022036 Car04g02953 Car-Chr4:22168537 2.68E-07 dispersed
Car09g00014 Car-Chr9:86707 Car12g00311 Car-Chr12:2022036 2.97E-06 transposed
Car12g00311 Car-Chr12:2022036 Car04g01265 Car-Chr4:7333201 2.32E-40 wgd
Car12g00311 Car-Chr12:2022036 Car05g00331 Car-Chr5:1798746 4.51E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4394 PF00170 bZIP_1 1.80E-13 CL0018 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00311 K16241 - csv:101218051 247.669