Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00313 ATGGCTGTCCTCGTCGTCGTCTTCTTCTTCACGCACATTTCCATGGCTCGAGGAGACATTGGCACGGCCACAGCCTATGGCCCTCCATATCTACCCACCCTATGTAATGGGAACCGCGTCGATCAGTTCCCACCTGGCAACCTCTTCGTGGCAGTGAATGAAGGGCTCTGGGACAACGGCGCTGCTTGCGGTCGACGTTATAGATTAAGATGTTTGAGCGGACGAAACCACCCATGCAAGACTGATATCATTGAAGTTCAGGTGGTGAACTTCTGCCCCAAGTCCCCGTGCCCCTCTTCCTTTCTCATGTCCAAAGAGGCCTTCGCAGCTATCTCTCGCCTCCCCAATGCTAGACTCAACGTCGAGTATATCGAAATATAA 381 52.76 MAVLVVVFFFTHISMARGDIGTATAYGPPYLPTLCNGNRVDQFPPGNLFVAVNEGLWDNGAACGRRYRLRCLSGRNHPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFAAISRLPNARLNVEYIEI 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2027342 2027874 + Carg03920-RA Car12g00313 157929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00313 126 Pfam Lytic transglycolase 51 123 IPR009009 -
Car12g00313 126 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 21 126 IPR007112 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00313 - - - csv:101208867 225.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01232 Car-Chr5:11533973 Car12g00313 Car-Chr12:2027342 2.17E-21 dispersed
Car06g01459 Car-Chr6:10365636 Car12g00313 Car-Chr12:2027342 6.91E-26 dispersed
Car12g00298 Car-Chr12:1960767 Car12g00313 Car-Chr12:2027342 1.22E-29 dispersed
Car12g00313 Car-Chr12:2027342 Car05g00329 Car-Chr5:1793839 1.32E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g463 . . . . . . . . . Cmo12g00281 . . . Car12g00313 . Cpe07g00290 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00332 . . . . . . . . . . . . . . . . . . Lsi08g01195 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007057 2 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 1 1 2 1 1 1 1 2 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00313 Car_Chr12 FPKM 0.0 0.628929 0.0 0.0 0.896919 0.0 1.199716 0.0 0.0 0.0