Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00314 ATGCAATCTCAATTTCTATTGCGTGTAATCAACAATGCGGCAGCTTCAAGATCCAACCCTCGTGCGGCGGAGCAGAACTGTTTAGCGCTGCTTCAGGCCTGTAATTCGCTACCGAAGCTCACCCAAATCCACGCTCACATCTTCAAATTGGGCCTCCGCAACAACCCGCTCGTCCTCACCAAATTCGCCTCCATTTCCTCTGTTATCAATGCCACCGATTACGCTGCCTCCTTCTTGTTCTCTGCCGAAGCCGATACTCGGCTTTACGATGCGTTTCTATTCAATACTCTCATTAGAGCCTTTGCCCAAACTGGTCACTCGAAGGCTAGGGCACTGTCTTTGTATGGTATTATGCTTCACGATGGGATTTTGCCTAATAAATTCACTTACCCTTTTGTTTTGAAGGCTTGTGCTGGCCTTGAGGTTTTGAGTTTGGGTCAATCGGTTCATGGGTCGGTGGTGAAATTTGGGTTTGATCATGATGTTCATGTTCAGAATACTATGGTTCATATGTACTCTTGTTGCAGTGGTGGGATAATTTTTGCCCGCAAGGTGTTTGATGAAATGCCCAAGTCAGATTCTGTGACTTGGAGTGCGATGATTGGAGGGTATGCTCGTGTGGGGCGCTCCACTGAAGCAGTGGCCTTATTTAGGGAGATGCAAATGGCGGAGGTTTGCCCGGATGAGATCACTATGGTCTCTGTTCTTAAAGCTTGTACTGATTTGGGTGCCCTTGAACTTGGGAAATGGATTGAAGCTTATATAGAGAGACAAGGAATTCAGAAACCAGTAGAGGTTAGCAATGCACTTATTGATATGTTTGCAAAGTGTGGCGATATTGGTAAAGCTTTGAAGTTATTTAGAGCTATGAGTGATAAAACGATAGTTTCTTGGACTTCTGTGATTGTTGGCATGGCAATGCATGGCCGTGGCCAGGAGGCTATTTCTTTGTTTGAGGAAATGATAGGTTCGTCCGGTGTTGCTCCAGACGATGTCGCCTTTATCGGGTTGCTTTCCGCTTGCAGCCATTCAGGACTAGTCGAAAGAGGTAGAGAATATTTCAATTCTATGATGAAGAAATACAAGCTTGTTCCTAAGATAGAACATTATGGATGCATGGTGGACATGTATTGCAGGACTGGACTTGTGAAGGAGGCTCTTGAGTTCGTTCATAACATGCCGATCGAGCCAAACCCGGTGATTTTACGAACGCTAGTCAGTGCTTGTCGTGGTCATGGTGAATTCAAGCTTGGTGAAAAGATCACCAAACTGTTAATGAGACATGAGCCTATGCATGAGTCAAACTATGTTTTGCTGTCCAACATTTATGCAAAGATGTTCAATTGGGAGAAGAAGACCAAAATTAGAGAAGTGATGGAAGTGAAAGGCATGAAAAAGGTTCCAGGAAGCACCATGATTGAGATAGATAATGAAATCTATGAATTTGTTGCTGGTGATAAATCTCATAAACAGTTCAAGGAAATTTACGCGATGGTGGACGAGATGGGGCGAGAGATGACGAAATCTGGATATCGACCTTCGACATCGGAAGTTTTGCTCGATATCAACGAAGAAGACAAAGAAGATACTTTGAATAGGCATAGTGAAAAACTGGCTATTGCATTTGGTCTTCTTAATACTCCACCAGGAACTCCGATTCGAATCGTAAAGAATTTGCGAGTTTGCACCGATTGCCACTCCGCTTCGAAGTTCATCTCGAAGATTTATGATCGTGAAATCATAATGAGGGACCGTAATCGGTTTCACCACTTCAAGGGCATGTCAAATTTCACTCTGTTTTGTTCAATCATTAAGGAAACTTCATCAAACACAGCACAGGATGCAGAGACTCTGAAATTATGA 1863 43.64 MQSQFLLRVINNAAASRSNPRAAEQNCLALLQACNSLPKLTQIHAHIFKLGLRNNPLVLTKFASISSVINATDYAASFLFSAEADTRLYDAFLFNTLIRAFAQTGHSKARALSLYGIMLHDGILPNKFTYPFVLKACAGLEVLSLGQSVHGSVVKFGFDHDVHVQNTMVHMYSCCSGGIIFARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSVLKACTDLGALELGKWIEAYIERQGIQKPVEVSNALIDMFAKCGDIGKALKLFRAMSDKTIVSWTSVIVGMAMHGRGQEAISLFEEMIGSSGVAPDDVAFIGLLSACSHSGLVERGREYFNSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVHNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMRHEPMHESNYVLLSNIYAKMFNWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQFKEIYAMVDEMGREMTKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLNTPPGTPIRIVKNLRVCTDCHSASKFISKIYDREIIMRDRNRFHHFKGMSNFTLFCSIIKETSSNTAQDAETLKL 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2029349 2032261 + Carg03921-RA Car12g00314 157930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00314 620 Pfam E+ motif 479 506 IPR046849 -
Car12g00314 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 329 IPR002885 -
Car12g00314 620 Pfam PPR repeat 296 323 IPR002885 -
Car12g00314 620 Pfam PPR repeat 268 293 IPR002885 -
Car12g00314 620 Pfam PPR repeat 369 393 IPR002885 -
Car12g00314 620 Pfam PPR repeat 336 360 IPR002885 -
Car12g00314 620 Pfam E motif 412 474 IPR046848 -
Car12g00314 620 Pfam DYW family of nucleic acid deaminases 510 592 IPR032867 GO:0008270
Car12g00314 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Car12g00314 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 365 IPR002885 -
Car12g00314 620 Pfam Pentatricopeptide repeat domain 90 138 IPR002885 -
Car12g00314 620 Pfam PPR repeat family 193 239 IPR002885 -
Car12g00314 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 125 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00314 - - - csv:101208624 1072.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00069 Car-Chr7:444459 Car12g00314 Car-Chr12:2029349 5.25E-149 dispersed
Car10g00191 Car-Chr10:910115 Car12g00314 Car-Chr12:2029349 8.94E-121 dispersed
Car12g00314 Car-Chr12:2029349 Car01g00940 Car-Chr1:9068389 1.66E-168 dispersed
Car03g00677 Car-Chr3:6008086 Car12g00314 Car-Chr12:2029349 2.16E-117 transposed
Car03g00854 Car-Chr3:6884422 Car12g00314 Car-Chr12:2029349 6.20E-179 transposed
Car04g01661 Car-Chr4:9561054 Car12g00314 Car-Chr12:2029349 4.79E-158 transposed
Car10g00904 Car-Chr10:5839740 Car12g00314 Car-Chr12:2029349 2.08E-88 transposed
Car14g00422 Car-Chr14:2158354 Car12g00314 Car-Chr12:2029349 2.58E-155 transposed
Car17g01047 Car-Chr17:8190306 Car12g00314 Car-Chr12:2029349 7.59E-107 transposed
Car18g01058 Car-Chr18:10811940 Car12g00314 Car-Chr12:2029349 4.77E-169 transposed
Car19g00097 Car-Chr19:790650 Car12g00314 Car-Chr12:2029349 1.06E-24 transposed
Car19g00163 Car-Chr19:1488492 Car12g00314 Car-Chr12:2029349 8.88E-164 transposed
Car10g00525 Car-Chr10:2633766 Car12g00314 Car-Chr12:2029349 1.84E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g465 . . . . . . . . . Cmo12g00282 . . . Car12g00314 . . . Bhi04g00972 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01266 Bpe14g00577 . . . . . . . Cma12g00333 . . . . . . . . . . . . . . . . . . Lsi08g01196 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00314 Car_Chr12 FPKM 20.474285 24.576504 21.355455 27.001965 21.616638 19.318008 21.310038 23.297821 23.727417 27.452715