Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00317 ATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTATGAGGAAGAGGAAGAGAAGGCACCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCACAGTTCGGGATTCAGAGACTTCCTATTGAAGCCGGAGCTTCTCCTGCAACACGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACATTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTAGTTCTGTGCCATACTAGGGAGCTTGCATACCAGATCTGTCATGAGTTCGAAAGGTTCAGCACTTATCTTCCCGATCTGAAAGTTGCAGTCTTCTATGGTGGGGTGAATATTAAAATTCACAAAGATCTTCTGAAGAACGAATGCCCTCATATTGTTGTTGGAACACCCGGAAGGATATTGGCATTGACAAGAGACAAGGACCTTTCCCTGAAGAATGTGCGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAGTCACTTGATATGCGGAGGGATGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCGGCGACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCTTTTCGGGAATTTACTGGTATATTGGAGGAGTATGTTGGTGATACAGTTTTAGAGCCAATGGAAATATATGTTGATGACGAGGCAAAGTTGACATTGCATGGTCTTGTCCAGCACTACATCAAACTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTCCTTGATGCATTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAGTAGGGCAGCTGAGCTGGATAAGTTATTGGTGGAGTGTAATTTTCCATCTATATGTATCCATTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTCAAGGAAGGACATAAGCGGATTCTTGTGGCAACAGATTTGGTTGGTCGAGGAATTGACATTGAACGCGTAAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACTTACCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAACAATGTTCAAGAAAGGTTCGAAGTAGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACAGTATTGCCATCATAGATGTAGAGATCTTCAGCATAGAATATCAGCTACCTGGGTTGCCTTTGTGGTTCACATGTCATTGTGGTTCGAATCCAAATCGGACTCGAAATGGATGGAAGCCACTGGCACTAGGCTTGGGTGCGAGAGGGTAA 1440 43.4 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLLQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPFREFTGILEEYVGDTVLEPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYSIAIIDVEIFSIEYQLPGLPLWFTCHCGSNPNRTRNGWKPLALGLGARG 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2038936 2043890 - Carg03924-RA Car12g00317 157933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00317 479 Pfam DEAD/DEAH box helicase 60 223 IPR011545 GO:0003676|GO:0005524
Car12g00317 479 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 237 IPR014001 -
Car12g00317 479 MobiDBLite consensus disorder prediction 1 22 - -
Car12g00317 479 Pfam Helicase conserved C-terminal domain 282 389 IPR001650 -
Car12g00317 479 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 429 IPR001650 -
Car12g00317 479 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00327 Car12g00317 CCT
Car05g00327 Car12g00317 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00317 Car-Chr12:2038936 Car14g01834 Car-Chr14:14266770 3.65E-68 dispersed
Car12g00317 Car-Chr12:2038936 Car05g00327 Car-Chr5:1782422 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00317 K12812 - csv:101217346 780.015