Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00318 ATGAGGGTATTTTACTTTGGTTTTGGAATCTTTAATAGTTGTATTTTTCTTCTTCATCAAGCAAAGTTGAGAGCTCGTTGGTTGGGGGTTTTTAGCCTCAAATCCTTTGATCAAGTTATGGGAAGTTGTTTACGCAGAGAAAGTATGTATTCTAGGTGTTGTCTACTCAGCCGCTTAGAGGGTTGTTCTAGCAAACCCTGTTGCTCGTTTTTACAGTTTTCTGGGAAATATCTGCGGGCTCTTATAGTTTTGGTGGTGGATAATCTCAAGCTTCTTTTTCATAGAAGAAGCTGTCGTGGACGCTGCACTGGACCTGCATTAGGTGATGCAATGGACGGGCCGTCTACTGGTCTGAGAGTCGAAGACCAAGAAGCTAAGAAACAATGCTTACCCGAAAATTTCGCGAGCTCTAGCACGTGTGAAATGGACAACAGTACAGTTTGGTCTCAAAGAAGCATGGCATCAGCTCAGTCGCATGATTCCCATAACAATGTTGGGAGCAGTACAGAGTTTGTAAATTCTGGACTACTTCTTTGGAACGAAACCCGGAAGCAATGGGTCGGAAATAAAACGTCCGAGAGCCAAAAGCGAGTTCGAGAACCCAAAATAAGTTGGAATGCTACTTACGACAGCTTACTTACGACGAACAAACCATTCCCGGAGGCCATACCTCTAGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGCCTGTATGACTGA 732 44.13 MRVFYFGFGIFNSCIFLLHQAKLRARWLGVFSLKSFDQVMGSCLRRESMYSRCCLLSRLEGCSSKPCCSFLQFSGKYLRALIVLVVDNLKLLFHRRSCRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIEFLVDVWEQEGLYD 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2045166 2049026 + Carg03925-RA Car12g00318 157934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00318 243 Pfam Protein of unknown function (DUF4050) 138 201 IPR025124 -
Car12g00318 243 Pfam Protein of unknown function (DUF4050) 201 243 IPR025124 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00318 - - - cmax:111496323 421.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00420 Car-Chr11:2364155 Car12g00318 Car-Chr12:2045166 4.67E-12 dispersed
Car12g00318 Car-Chr12:2045166 Car12g01177 Car-Chr12:11308637 1.84E-23 dispersed
Car01g00125 Car-Chr1:632804 Car12g00318 Car-Chr12:2045166 1.91E-27 wgd
Car10g00507 Car-Chr10:2551737 Car12g00318 Car-Chr12:2045166 2.86E-45 wgd
Car12g00318 Car-Chr12:2045166 Car17g00800 Car-Chr17:6951737 1.24E-37 wgd
Car12g00318 Car-Chr12:2045166 Car05g01208 Car-Chr5:11417470 5.74E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g481 . . . . . . . . . Cmo12g00286 . . . Car12g00318 . Cpe07g00295 . Bhi04g00955 . . . Hepe10g0252 . . . . . . . . . . . Cone17ag1022 . . . . . . . . . . . . . . . . . Cma12g00337 . . . . . . . . . . . Cla08g01333 Cam08g1795 Cec08g1374 . Clacu08g1489 . . . . Chy03g01121 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012949 0 5 0 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 4 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00318 Car_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.697891 1.535684 1.186878