Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00320 ATGACTTCCACCTTCTCCCACCTGCCGCCGTGCAACGCCGCCGCCGCCGCCGTCTCCTCGTCATCTCTCAGACATTATTTCAAGCCAAAAGTTCCCGCGCTATCGTCACCTTCGACGGTACCATTTCGCTCTAAAACTGCCATCAATTGTTCTTCCCCCGCTCATGCCGATGCTTCTGTTCAGACCGATTTCTGCTTTCTGAAGAAGAGGGAATTTGTCTTTTCTGCCGCGCTGCCATTTCTTCTTATTTTGCATGAATCCGTGGAAGTCTTTAGAGCCGAGGCGGCAGAAAGATTGGATAGAAGTGAAGATGAACGGATAAGAGAAGAAGTAAGGAAGGTAGTAACCAAAGGCAGGGCTCCTGGTCTGCTTCGTCTGGTGTTTCACGATGCTGGAACCTTTGAAATGAACGATAATTCAGGTGGTATGAATGGGTCTATCATTCACGAACTTAATAGACCTGAAAACAAAGGTCTCAAGAAGTCAGTTAAGATTCTTGAAGAAGCAAAGAGTAAACTGGATTTAATAAGACCAGTATCTTGGGCAGACTTAATAGCAGTGGCTGGCGCTGAAGCAGTTTCAATATGTGGAGGTCCAATAATTGCTGTTGAGTTGGGTAGATTAGACTTCGGGAAGCCAGATCCTGAAGGTAAACTTCCTGAAGAATCCTTGGATGCTGTTGGACTGAAGCAAATCTTCAGCAAAAAAGGATTCGCAACACGGGAACTAGTTGCTCTATCTGGAGCCCATACTATTGGTGGTAAAGGTTTTGGAAGCCCTGTTGTTTTTGATAATGCATATTTCAAAATCCTTTTGGAGAAGCCATGGTCATCTAAGGGTGGTATGTCCAGTATGATAGGGCTGCCTTCTGATCGTGCTCTTGCTGATGATGATGAATGCTTGAGATGGATCAAAGAGTACGCCAACAATCAGAATGTGTTCTTCGAAGATTTCCAGAATGCTTATATCAAGCTAGTGAATTCTGGTGCGAAGTGGAAAAGCTAG 1005 45.07 MTSTFSHLPPCNAAAAAVSSSSLRHYFKPKVPALSSPSTVPFRSKTAINCSSPAHADASVQTDFCFLKKREFVFSAALPFLLILHESVEVFRAEAAERLDRSEDERIREEVRKVVTKGRAPGLLRLVFHDAGTFEMNDNSGGMNGSIIHELNRPENKGLKKSVKILEEAKSKLDLIRPVSWADLIAVAGAEAVSICGGPIIAVELGRLDFGKPDPEGKLPEESLDAVGLKQIFSKKGFATRELVALSGAHTIGGKGFGSPVVFDNAYFKILLEKPWSSKGGMSSMIGLPSDRALADDDECLRWIKEYANNQNVFFEDFQNAYIKLVNSGAKWKS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2057469 2061595 - Carg03927-RA Car12g00320 157936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00320 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 242 252 IPR019793 -
Car12g00320 334 Coils Coil 92 112 - -
Car12g00320 334 ProSiteProfiles Plant heme peroxidase family profile. 120 334 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car12g00320 334 Pfam Peroxidase 108 310 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car12g00320 334 ProSitePatterns Peroxidases active site signature. 120 131 IPR019794 GO:0004601
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00320 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216396 541.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01236 Car-Chr1:11327794 Car12g00320 Car-Chr12:2057469 1.98E-16 dispersed
Car12g00320 Car-Chr12:2057469 Car16g00613 Car-Chr16:3920485 7.79E-41 dispersed
Car12g00320 Car-Chr12:2057469 Car02g00619 Car-Chr2:4663388 8.33E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00320 Car_Chr12 FPKM 0.570901 0.603797 0.0 0.0 1.030561 0.860274 1.173863 0.0 0.155651 0.094179