Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00335 ATGGCTTTCCGGGACCAACTCTCTCGGGGACTTCCGCTCCATTACGGGAACCAGCCTCCGGAGGAGCAGTCGGAACGGCCGCTTGATAGCACTCTGCGCTCTATTTTATCTGATCACTCTACGGCTGGCGATGGTTCTAAGTCTGAGCATCTGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAACACCTCATTCTCAGTATTCTGGTGATTCCATGACGAGCGCTGCGGATAAGGACATCACCGACTTCCTTAATCTTCACACGACGGGTTCTAATTCTGCTGTGTCTCATCCGACCGGTCAATGGCTCTCCCGTCCGATCCTCCATCGCGATCATAGTGATGTTATTGATGAAGTTGCCGATGCTGCCGATGCTATGATTGGCGCCACGACCACTTTGTCGCGCGAATCGGATGATTTGAAGAACAATAGCTGCGGCGGCGGAGGGGAGGGTGTGAACAACAGTGACGATGTGGCGATTGAGAGCGATGGTAATGAAGGTGCTCATTGTGAAGAGGCGGCAGTGAATTGGCAGAATGCGCGGGCTAAGGCTGAAATTCTGGCGCATCCACTTTACGAGCAGTTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACACCGGTGGATCAGTTGCCGAGGATAGATTCTCAGCTTGCTGAGTCTCAGAATGTGGCGGCAAAGTACTCGTCGCTGGGGCACGGTTCTCAGCCCGTAGTCGGAAATGGAAAAGAGATCGATCAGTTCATGACGCATTATGTTCTATTACTTTGTTCGTTTAAAGAACAACTTCAGCAGCATGTCCGCTTCCATGCAATGGAAGCAGTGTATGCCTGCTGGGAAATTGAGCAATCTTTGCAGAGCTTGACAGGTGTTTCACCTGGTGAAGGTACGGGTGCTACCATGTCTGATGATGAGGAAGACCAGATAGATAGCGATGCTATTATGTTTGATGGATGTTTGGAGGGTCATGATGCTACGGGATTTGGTCCCCTTATCCCAACAGAGAGTAAACTTCCTGGTGGCACTACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATACCCTACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTGCAACTGAAGCAGATAAACAACTGGTTTATTAACCAAAGGAAGAGGAATTGGCACGCCAATCCTTCAACCACAACAACCATGAAGACCAAACGCAAAAGTAATGCAGGTGACACACCAGACGACGACCACGAATAG 1275 50.04 MAFRDQLSRGLPLHYGNQPPEEQSERPLDSTLRSILSDHSTAGDGSKSEHLLQSTPNWLNSALLRNQTPHSQYSGDSMTSAADKDITDFLNLHTTGSNSAVSHPTGQWLSRPILHRDHSDVIDEVADAADAMIGATTTLSRESDDLKNNSCGGGGEGVNNSDDVAIESDGNEGAHCEEAAVNWQNARAKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAESQNVAAKYSSLGHGSQPVVGNGKEIDQFMTHYVLLLCSFKEQLQQHVRFHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQIDSDAIMFDGCLEGHDATGFGPLIPTESKLPGGTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHANPSTTTTMKTKRKSNAGDTPDDDHE 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2114504 2120176 - Carg03942-RA Car12g00335 157951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00335 424 Pfam KNOX2 domain 246 296 IPR005541 GO:0003677|GO:0005634
Car12g00335 424 Pfam KNOX1 domain 189 229 IPR005540 GO:0003677|GO:0005634
Car12g00335 424 MobiDBLite consensus disorder prediction 1 30 - -
Car12g00335 424 ProSiteProfiles 'Homeobox' domain profile. 364 399 IPR001356 GO:0003677
Car12g00335 424 MobiDBLite consensus disorder prediction 393 412 - -
Car12g00335 424 MobiDBLite consensus disorder prediction 393 424 - -
Car12g00335 424 MobiDBLite consensus disorder prediction 142 171 - -
Car12g00335 424 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00335 Car-Chr12:2114504 Car15g01077 Car-Chr15:8459115 2.90E-76 dispersed
Car12g00335 Car-Chr12:2114504 Car04g01255 Car-Chr4:7284554 5.39E-100 wgd
Car12g00335 Car-Chr12:2114504 Car05g00310 Car-Chr5:1707821 0 wgd
Car12g00335 Car-Chr12:2114504 Car09g00379 Car-Chr9:2088126 2.02E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4395 PF03791 KNOX2 2.30E-18 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00335 - - csv:101213817 666.381