Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00340 | ATGGCGAGGCCTCAACAGCGGTATCGAGGCGTTCGTCGACGGCATTGGGGGTCTTGGGTTTCCGAAATTCGACACCCTTTATTGAAGACCAGAATTTGGCTGGGCACTTTCGAAACGGCCGAAGATGCAGCCAGAGCCTACGACGGAGCCGCCCGGCTCGTGTGCGGCCCTAGAGCAAGAACCAATTTCCCCTTCAATGCAAACGATTCCAATTCTTTTAAACTCTTCTCTGCAAATTTGACCGCCAAGCTTCACCGGTGCTACATGGCGTCTCTGCATTTGACAAACCCATCGCCGCAAGTGACGACAGAGAACGAAAGGGTGGCGGCGGCGGTGAAAAAGGGTCAGACGGAGATGGCCGCCCATCAGCCGTTTGAGGCTCTGGAAGAGAATGATATTGAACAGATGATTGAGGAATTGATTCATAATGGGTCTGTTGAGCTCTGTTCTGTGATGCCGCCGCCGCCGCCGCCGTCGTCTCAGGCGTTTTGA | 492 | 54.27 | MARPQQRYRGVRRRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDGAARLVCGPRARTNFPFNANDSNSFKLFSANLTAKLHRCYMASLHLTNPSPQVTTENERVAAAVKKGQTEMAAHQPFEALEENDIEQMIEELIHNGSVELCSVMPPPPPPSSQAF | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2145444 | 2146059 | + | Carg03947-RA | Car12g00340 | 157956 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00340 | 163 | Pfam | AP2 domain | 7 | 52 | IPR001471 | GO:0003700|GO:0006355 | |
| Car12g00340 | 163 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00303 | Car-Chr5:1684311 | Car12g00340 | Car-Chr12:2145444 | 3.90E-61 | dispersed | |
| Car11g00423 | Car-Chr11:2374062 | Car12g00340 | Car-Chr12:2145444 | 7.66E-32 | dispersed | |
| Car01g00150 | Car-Chr1:768968 | Car12g00340 | Car-Chr12:2145444 | 3.32E-42 | wgd | |
| Car12g00340 | Car-Chr12:2145444 | Car17g00833 | Car-Chr17:7091802 | 1.53E-33 | wgd | |
| Car12g00340 | Car-Chr12:2145444 | Car04g01251 | Car-Chr4:7250674 | 1.40E-61 | wgd | |
| Car12g00340 | Car-Chr12:2145444 | Car05g00302 | Car-Chr5:1680751 | 8.65E-76 | wgd | |
| Car12g00340 | Car-Chr12:2145444 | Car08g00507 | Car-Chr8:3192328 | 7.24E-51 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4396 | PF00847 | AP2 | 2.50E-10 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00340 | - | - | cpep:111805765 | 228.794 |