Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00348 ATGATAGCTTTCAGAGAGAAGAAGAAGAAGGAGGAGGAGGAGGAGAAGAGCGTTTCTTCTTCTTCTTCTTCTTCCTGTTATTATCATCTTCCATTGAAGATGAAGTTTATGAAGTTGGGATCCAAACCAGACGCTTTTCTAGCTGATGGAAAAATTACTCGGTATGTTTCATCTGAATTGCCAACGGACGCTACCATTTTTGTGGGTGAAGTAAAGTTTCTTGTTCACAAGTTTCCTCTGTTGTCCAAGAGCAATTGCTTGCAGAAACTAGTATCGAAAGCCAATGAGGAGAATTCCGAAGAAATTCATCTGATTGATTTTCCTGGTGGACCTAAGGCATTTGAAATCTGCGCTAAGTTTTGCTATGGAATGACTGTTACTCTCAATGCCTATAATGTAGTGGCTGCTCGTTGTGCGGCCGAATTCCTCGAAATGACAGAGGACATCGAAAGAGGAAATCTTGTATTCAAGATTGAGGTGTTCCTAAACTCTAGCATCTTCCGTAGTTGGAAGGACTCCATCATTGTGCTCCAAACAGCCAATTCTCTTCTTCCATGGTCTGAAGATCTGAAGATTGTAGGGAGATGTATCGACTCTATTGCCTCAAAAACTTCTGTGGACCCTGCAAATATCACATGGTCTTACACATACAACAGGAAATTATTAGAGGCCCATAAAATTGTAGAAGATGGAATGAAGTACCAAAAGAAAATCGACTGTGTACCGGACGATTGGTGGGTTGAAGATGTTTGTGAGCTAGAGATTGATCTGTATAGACGTGTTATGATCGCCGTGAAATCAAAGGGCAGAATGGATGGTTCTGTGATTGGGGAGGCACTGAAAACTTATGCTGTTAGATGGTTACCAGACACTGTAGATGCCTTGGCCTCTGATGCCCATATTAAGAGGAACAAATCTCTCATTGAAACAATCATTTGCTTATTGCCATCCGACAGAAACATAGGCTGCTCTTGCAGTTTCTTGCTCAAACTCATGAAAGTTGCCATTTTGGTTGGAGCCGATGATGCATTGAGAGAGGATTTGGTGAAGAGAATTAGCTTGAAGCTGCATGAAGCTTCAGTCAAAGATTTATTGATTCTTGCACAATCTCCTCAAGTAACAAAATATGATGTTGATTTGGTTCATAGGATTGTGAATCAGTATTTTGCTCATCAGAAGTTCAACCGAGATGCGGACGGTATCGAGAGGAGCGAGAAAGGGGCTGAAAATCTTTTACTGGGGCGTGGATCCTCATTGAATGTTGCTAAATTGATTGATGAGTATATTGCTGAAATTGCAGATGACCCAAATCTCTCGCTCGCTGGTTTCATTGACTTGTCACGGTCGATTCCTGAATTTGCAAGGCCAATACATGATAGATTATATAAAGCGGTCGACATTTATCTTAAGGTACACCCAAGTTTGACAAAATCTGAGAAGAGAAAGATTTGTAGTCTGATCGACGTCAAGAAACTTACAACAGAGGCATCGATGCATGCAGCGCAGAATGAACGGCTCCCGCTTAGAGTTGTAGTTCAGGTGCTCTTCTTTGAACAGGTTAGAGCCTCAGCTGTGGTCGAAGCGCAACACAACTCCCGGGACTCTTCAAGTGTAATGACAAGCATAGACGAAGAATGCCCGAAGGAACTGGATAGCTTCAAGTCCCTAAAACACAATATGGGGCACATGAAGATAAGCGAGGACATTCAGAAAACTAAAAAGTTAGCTAAGAAGAACAGCAAGAACAGTAGAAGTGGTATGCAACTGTTGCCTTCAAGGTCAAGAAGAATATTCGATAAGCTATGGATCATAGGTAAAGGGCACGGTGAAAGTCGCAGTCCCGACACGTCGGGGAGCTCTCAGAGCCCAACTTCAGTGGTTCCTGGGCACATGATTAAGTCTTCTGGTTCATATTCAAGACAGAGGAGGCACTCGATCTCTTAG 1944 42.54 MIAFREKKKKEEEEEKSVSSSSSSSCYYHLPLKMKFMKLGSKPDAFLADGKITRYVSSELPTDATIFVGEVKFLVHKFPLLSKSNCLQKLVSKANEENSEEIHLIDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEFLEMTEDIERGNLVFKIEVFLNSSIFRSWKDSIIVLQTANSLLPWSEDLKIVGRCIDSIASKTSVDPANITWSYTYNRKLLEAHKIVEDGMKYQKKIDCVPDDWWVEDVCELEIDLYRRVMIAVKSKGRMDGSVIGEALKTYAVRWLPDTVDALASDAHIKRNKSLIETIICLLPSDRNIGCSCSFLLKLMKVAILVGADDALREDLVKRISLKLHEASVKDLLILAQSPQVTKYDVDLVHRIVNQYFAHQKFNRDADGIERSEKGAENLLLGRGSSLNVAKLIDEYIAEIADDPNLSLAGFIDLSRSIPEFARPIHDRLYKAVDIYLKVHPSLTKSEKRKICSLIDVKKLTTEASMHAAQNERLPLRVVVQVLFFEQVRASAVVEAQHNSRDSSSVMTSIDEECPKELDSFKSLKHNMGHMKISEDIQKTKKLAKKNSKNSRSGMQLLPSRSRRIFDKLWIIGKGHGESRSPDTSGSSQSPTSVVPGHMIKSSGSYSRQRRHSIS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2209917 2215610 - Carg03955-RA Car12g00348 157964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00348 647 ProSiteProfiles NPH3 domain profile. 244 521 IPR027356 -
Car12g00348 647 MobiDBLite consensus disorder prediction 606 647 - -
Car12g00348 647 Pfam NPH3 family 244 497 IPR027356 -
Car12g00348 647 MobiDBLite consensus disorder prediction 612 647 - -
Car12g00348 647 Pfam BTB/POZ domain 59 147 IPR000210 GO:0005515
Car12g00348 647 ProSiteProfiles BTB domain profile. 62 130 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00348 - - - csv:101210907 1118.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00294 Car12g00348 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00348 Car-Chr12:2209917 Car16g00291 Car-Chr16:1802904 6.49E-172 dispersed
Car12g00348 Car-Chr12:2209917 Car05g00294 Car-Chr5:1625474 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g581 . . . . . . . . Cmo05g00352 Cmo12g00318 . Cma05g00348 . Car12g00348 Sed14g1268 Cpe07g00324 . Bhi04g00051 Tan02g2763 Cmetu04g0384 . . . . . . . . . . . . . . . . . . Cme03g01576 Blo17g00002 . Bda01g01360 . Bpe14g00601 . . Bma02g00007 . . . . Cma12g00365 . Car05g00294 Cpe11g00294 . . . . . . . . Cla08g01367 Cam08g1836 Cec08g1415 Cco08g1544 Clacu08g1531 . Cre08g1315 Lsi08g01250 . Chy03g01083 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004771 0 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00348 Car_Chr12 FPKM 86.3452 93.774834 77.135826 77.282974 116.454124 129.696426 122.208817 117.615356 124.026611 120.040398