Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00349 ATGGCTGCTCTTTTGAAAGCTCTGTTTCTTTTCGTCTTCGTCTTCTTCAGCTTGTCGGAAGCCAGAGAGATCTTGGTCGGAGGCAAAACCAACGCCTGGAAAATCCCTTCTTCTCCAGCTCAATCTCTCAATCAATGGGCCGAAAGCTCCCGGTTTCGTGTCGGCGACACTCTCGTGTTGAAAGTGAGGAAGGAAGATTACGAAGCTTGCAACATTACGAACCCACAAGAGAAACTGGAGGACGGGAGCGCCAAGGTGGAGCTTCACAACCCGGGTCCGATCTACTTCATCAGTGGAGTAAAGGGTCACTGCGAGCAGGGTCTTAAGCTTGTCGTGGTCGTTATGACTCCTCGTCACAGGTTCATTGGCATCTCTCCGGCGCCTTCTCCGGCGGAGATTGAGGCTCCGGCGGTTGCTCCCTCGAGTGGGGCTGCAAGTTTGAAGGCCAACAAGCATACCATCCTTCTTATGCAAACATCTCACAACAGATCAACTAGGACTTTTATGGATTATGATTCAATAAGTCAATCTATGGACGGTATATGTGGCCTATACGAAAGGAAACTTAAGGACTTAAATCCGGCCATCAGAAATATCACTTATGACATTGCAGATCTCTACAATTTTATCGATGGTCTCACTGATATGAGCGCACTAGTGTATGCTGCCTTCACTTTATCACTCTTTTCCCCTTCCCCACTACTCAAGAATAAAAATCGAACTTTTCGGGCTGTTGGAAGAACAACAGTTTTGCCCACAATCTTCAAAATATTCGAGCATTCAATTCAGGGATATTTGCCTTATGATCGGCAGTGGATTAAACAAAAGATCTTTCAACATCTGAAGAAACTAGCACATTGA 861 46.11 MAALLKALFLFVFVFFSLSEAREILVGGKTNAWKIPSSPAQSLNQWAESSRFRVGDTLVLKVRKEDYEACNITNPQEKLEDGSAKVELHNPGPIYFISGVKGHCEQGLKLVVVVMTPRHRFIGISPAPSPAEIEAPAVAPSSGAASLKANKHTILLMQTSHNRSTRTFMDYDSISQSMDGICGLYERKLKDLNPAIRNITYDIADLYNFIDGLTDMSALVYAAFTLSLFSPSPLLKNKNRTFRAVGRTTVLPTIFKIFEHSIQGYLPYDRQWIKQKIFQHLKKLAH 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2220059 2225156 + Carg03956-RA Car12g00349 157965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00349 286 Pfam Plastocyanin-like domain 33 107 IPR003245 GO:0009055
Car12g00349 286 Pfam Enhancer of rudimentary 257 284 IPR000781 -
Car12g00349 286 Pfam Enhancer of rudimentary 151 225 IPR000781 -
Car12g00349 286 ProSiteProfiles Phytocyanin domain profile. 22 116 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00349 - - - csv:101210664 195.282
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00293 Car12g00349 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00349 Car-Chr12:2220059 Car09g00771 Car-Chr9:4545278 1.24E-24 dispersed
Car02g00081 Car-Chr2:536777 Car12g00349 Car-Chr12:2220059 3.92E-13 transposed
Car04g00882 Car-Chr4:5077060 Car12g00349 Car-Chr12:2220059 2.79E-25 transposed
Car05g00293 Car-Chr5:1619451 Car12g00349 Car-Chr12:2220059 6.96E-70 transposed
Car16g00852 Car-Chr16:6228714 Car12g00349 Car-Chr12:2220059 4.56E-22 transposed
Car12g00349 Car-Chr12:2220059 Car05g00291 Car-Chr5:1611712 1.71E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00349 Car_Chr12 FPKM 7.922146 9.118098 8.153278 7.024832 5.7202 5.158395 6.677696 13.266479 15.573753 18.67642