Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00350 ATGAGTTCATTTTCCATCACTCGGAAAAAGACTCCTTTCCAGAAACACAGAGAGGAGGAAGAGGCAAAGAAGAAGAGAGAGGAGGACGAAACTGCTCGATTGTATGCGGAATTCGTGGAGTCATTTCAAGGAGATAATGCGCCCGGGTCTAAGACTTTTGTTCGTGGAGGAACTATTAACCCCAATGAGAAATTGAAGAGCGAATCCGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTCCCATCGTTCATTCCACCTCCATTGGCATCCAAGGGAAAAGAATCCGACAAGAAGGAGCTGGACAAGCCAAAGGAGAAAGAAAAAGGAAAGTCTAGGAACATCGATCATTTTATGGAGGAGCTGAGGCACGAGCAAGAGATGAGGGAAAGAAGAAATCAAGATCGCGAACATTGGCGAGAAGGACGTCATGGAGAAAATTCAACCCTATCTAGTCGATTTGATGAACTACCTGATGACTTCGATCCTAGTGGGAAGTTCCCTGGATCATTTGATGATGGAGATCCTCAAACGACTAACCTTTATGTAGGAAATTTATCTCCACAGGTTGATGAAAACTTTCTCCTTCGAACTTTTGGAAGATTTGGACCAATTGCTAGTGTAAAGATAATGTGGCCAAGGACAGAGGAGGAGCGAAGACGGCAAAGAAATTGTGGATTTGTGGCTTTCATGAATAGGGCTGATGGACAGGCTGCAAAGGATGAAATGCAGGGAGTCGTTGTTTATGGGTATGAACTGAAAATTGGATGGGGAAAGTCTGTCGCTCTTCCATCTCAAGCATTACCAGCACCTCCTCCAGGTCATATGGCCATTAGAAGTAAAGAGGGTGCCACTGTTATCTTATCTGGCTCATCAGGACCGCCAGTCACTTCTGTCCCAAGTCAAAATTCTGAACTGGTTCTGACACCCAATATTCCTGATATTACTGTTGAACCGCCTGAGGATGATCATCTCCGCCATGTCATTGACACTATGGCTCTTTACGTTCTGGATGGAGGTTGTGCCTTTGAACAAGCTATTATGGAGAGGGGTCGGGGAAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAAGAGAACATACTTACTATGTTTGGCGACTTTACTCATTTGCTCAGGGGGATACACTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACTGGTAGTGGGAGATGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGCTAGAGAAGGAGTCTGGTCCCACATATGCTGCCGGAAGAAGCAGACGTGTGGAGCTTGAAAGAACATTAACTGATTCACAAAGAGATGAGTTTGAGGACATGCTTCGGGCATTGACACTAGAAAGGAGTCAGATAAAGGACGCAATGGGGTTTGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCTCTAACACTTAGGGAAACTCCTATTCCTACCAAAGTTGCACGGTTGATGCTTGTGTCTGATATCCTTCATAACAGTAGTGCTCCTGTCAAGAATGCATCTGCATACCGCACAAAGTTTGAAGCATCATTACCTGACATCATGGAGAGCTTCAATGATCTGTATCGCAGTATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTACTGAAATTGTTGCAAGTATGGTCCGATTGGTTTCTGTTCTCAGATGCTTATGTGAATGGATTGCGAGCCACATTCCTTCGCTTGGGAAACTCGGGTGTGATCCCTTTTCATTCATTGTGTGGCGATGCCCCAGAGATTGAACGGAAGGCCAATAGTGATAATTTAGGAGATGGGGGTAAAATCAATCAAGATGCTGAATTGGCAATGGGAAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTTGGAGAATTGGAAAGAAGGTGCAGGCATAATGGATTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTGAGCCTCGAAGAGGAAGAAAAACAGAGTGGATTTGAACTTGATGAACACTTGAAGTATAGTAATTCTCATTCTGGTAGATATTCAAGTAGCTCGAGAGAAACTAAAGTTGATCGTGATCGAGCAGAAATTTCTGGATGGAATCGTTTTGGGGATGATGATACAGATTTCCAAAGGATGGGTTCTGTGCCTTTGGCTCAAACTCTTTCCATTCCACAGCCTGAACTAAAAGGCTTCACGAAGTCGGGGAAAAATGAGCCCGTTTTGCCCATCTCTAAATGGGCGAGGGAGGATGATGAAAGTGACAATGAGCAAAAAGGAGGTACTAGAGGTCTTGGATTAAGTTACTCATCTTCTGGAAGTGAAAATGCGGGCGATGGTTCTAGTAAAGCTGATGAGATGGACATTACTACGGAGGCAAGTGTTCTTATGCAACCTGATAGTGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGACGTGTAGAGGTGGCTTTGATCGAATATCGTGAGTCCTTGGAAGAACGGGGCATCAAAAGTGTAGAGGAAATAGAGAGGCGGGTTTCGATTTATCGAAAACAACTAGAATCTGAACATGGATTGTCAGATTCCAATGAGACTGCATTAAGGAAGAGTAAGTTCTATTGCATCAACTGTTTGATCTGA 2664 44.03 MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKSESEGEKSKDGVSVPKKGSRYVPSFIPPPLASKGKESDKKELDKPKEKEKGKSRNIDHFMEELRHEQEMRERRNQDREHWREGRHGENSTLSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGSSGPPVTSVPSQNSELVLTPNIPDITVEPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSREHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEKESGPTYAAGRSRRVELERTLTDSQRDEFEDMLRALTLERSQIKDAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEASLPDIMESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVIPFHSLCGDAPEIERKANSDNLGDGGKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEEEKQSGFELDEHLKYSNSHSGRYSSSSRETKVDRDRAEISGWNRFGDDDTDFQRMGSVPLAQTLSIPQPELKGFTKSGKNEPVLPISKWAREDDESDNEQKGGTRGLGLSYSSSGSENAGDGSSKADEMDITTEASVLMQPDSGLNEEQRQKLRRVEVALIEYRESLEERGIKSVEEIERRVSIYRKQLESEHGLSDSNETALRKSKFYCINCLI 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2226270 2239025 + Carg03957-RA Car12g00350 157966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00350 887 MobiDBLite consensus disorder prediction 775 793 - -
Car12g00350 887 MobiDBLite consensus disorder prediction 758 773 - -
Car12g00350 887 Pfam cwf21 domain 817 864 IPR013170 -
Car12g00350 887 Coils Coil 17 37 - -
Car12g00350 887 Pfam CID domain 450 578 IPR006569 -
Car12g00350 887 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Car12g00350 887 MobiDBLite consensus disorder prediction 99 164 - -
Car12g00350 887 MobiDBLite consensus disorder prediction 65 80 - -
Car12g00350 887 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 261 IPR000504 GO:0003723
Car12g00350 887 MobiDBLite consensus disorder prediction 11 35 - -
Car12g00350 887 MobiDBLite consensus disorder prediction 1 164 - -
Car12g00350 887 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Car12g00350 887 Coils Coil 448 468 - -
Car12g00350 887 Coils Coil 818 838 - -
Car12g00350 887 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Car12g00350 887 MobiDBLite consensus disorder prediction 733 798 - -
Car12g00350 887 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00350 K12842 SR140; U2-associated protein SR140 - csv:101209274 1589.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00290 Car12g00350 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01201 Car-Chr1:11094813 Car12g00350 Car-Chr12:2226270 7.97E-06 dispersed
Car09g00463 Car-Chr9:2579304 Car12g00350 Car-Chr12:2226270 8.64E-06 dispersed
Car12g00350 Car-Chr12:2226270 Car15g01026 Car-Chr15:8013883 1.00E-08 dispersed
Car12g00350 Car-Chr12:2226270 Car05g00290 Car-Chr5:1596331 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00350 Car_Chr12 FPKM 35.604271 37.645512 32.588791 32.114773 24.842775 26.08568 28.258169 58.394432 56.705341 61.874634