Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00354 ATGGCGAACGAAGAAGAGAGAGTTCTAGAGCACCAGCTGGAACTTCAATTGCATGAGCAGAGAGATTCCTTGTCCGCCTTACAGGATGCCCTAGCCTCCGACGCATCCAATCCCGAGCTTCTCGCGGTGCACGAGGAGTTACTCCAGGCAATTAAAGAGGCTGAGGAAGGGCTTCTTCACCTCAAGCGTGCTAGGTTATTGCGAGAAGCAGATTCGGTGTTGCGTGGTTTTGATAGTAACGCGGTGGAGGATGTTAAGGTGGAGTCTCTTGATCCTACTGACGTCCAGCCTGAACCTCTAGAGGATCGGAGTTTCATCGTTGGATCGAAATGTAGATTCCGGCACACTGATGGACGATGGTATGATGGTGAAATTGTTGGATTGAATGGTTCCAATTCTGCGAAAATATCCTTCCTCACTCCTACAACTGATAATATGTTGATATGCAAGTTCTTCTTACAGCAAAGATGTCGGTTTGGCACTAACTGCCGCTTATCACATGGTGTGGATATCCCTTTAACCTCCCTTAGGAGATATGTGCCAACAATTTGGAATCAGTCACTGGCCGGGTCCAGTGTCTGGGCTCTCTCGTCTAGGAATGGCGTTTGGAGGCAGGCTGAACTTGAATCTTGGGATAATGCACTTCAAGTTGCACAAGTTGTTTTTAAAGATGATAGATCCTCTCAAAATCTTGGACCAGAGGATATAGCATTATCTGAGTATGCTCAGATTAGTGATGGTGAAGAAAGCGATTCCAGCTTGGTACAGTCCGACTCAAGTGATTACGACGAGGATGATCTGCAGGGTTTGGGATTTCTGGAAAGTTCTGCCCAGCAGAGGGGCATCCAGACGGAGACCGCCATATTTGCGAAATGGGAGAACCATACCCGGGGAATCGCTTCCAAGATGATGGCTAATATGGGCTATCGCGAAGGAATGGGTTTGGGTGCATCTGGGCAGGGGATGCTAAATCCTATCCCTGTCAAGGTACTTCCAGCAAAGCAATCTCTTGACCATGCTCTAGAGTCACAAAAAGAAGATAATACTAACGACGAGAATAACGGTAAGAAACGAAGTAGAGGCGGTAAGAGGAAACGTGACAAGAAGTTCGCTGCAGCAACCCGGGCAGCTAAAGACGTAGAAGAGTCGAGACCTGATGTCTTTAACCTCATCAACAACCACCTTGCAATGCATAACGGAGAATTGAACAATGGATCCACGAAGAAACAGAAAGACAAAGGTTCAGCAGCAGATGGGAAGAAGGTGGATAGACGAAGCCTAATTGCGTACGACGACGAGGTGAAAGACCTGCGGATACGAATAGAGAAGCTCGAGGAAATGGTGAACAGAAATAAGAAAGAGAAGGTTGTTTATGAGGCAGCCTTAAGAAAACTGACCGAGACTCGTAAAGCTTTGGCGGAGGTGGAGGCAGCTCATGCATCTGCATCAAATGCAGTTACCAGCAGAGAAAAGGAAAAAAGATGGTTGAAGTTCTAG 1497 47.09 MANEEERVLEHQLELQLHEQRDSLSALQDALASDASNPELLAVHEELLQAIKEAEEGLLHLKRARLLREADSVLRGFDSNAVEDVKVESLDPTDVQPEPLEDRSFIVGSKCRFRHTDGRWYDGEIVGLNGSNSAKISFLTPTTDNMLICKFFLQQRCRFGTNCRLSHGVDIPLTSLRRYVPTIWNQSLAGSSVWALSSRNGVWRQAELESWDNALQVAQVVFKDDRSSQNLGPEDIALSEYAQISDGEESDSSLVQSDSSDYDEDDLQGLGFLESSAQQRGIQTETAIFAKWENHTRGIASKMMANMGYREGMGLGASGQGMLNPIPVKVLPAKQSLDHALESQKEDNTNDENNGKKRSRGGKRKRDKKFAAATRAAKDVEESRPDVFNLINNHLAMHNGELNNGSTKKQKDKGSAADGKKVDRRSLIAYDDEVKDLRIRIEKLEEMVNRNKKEKVVYEAALRKLTETRKALAEVEAAHASASNAVTSREKEKRWLKF 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2254103 2257488 + Carg03961-RA Car12g00354 157970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00354 498 Pfam G-patch domain 296 338 IPR000467 GO:0003676
Car12g00354 498 MobiDBLite consensus disorder prediction 342 382 - -
Car12g00354 498 ProSiteProfiles Zinc finger C3H1-type profile. 143 170 IPR000571 GO:0046872
Car12g00354 498 Coils Coil 427 478 - -
Car12g00354 498 Coils Coil 1 21 - -
Car12g00354 498 MobiDBLite consensus disorder prediction 245 267 - -
Car12g00354 498 MobiDBLite consensus disorder prediction 398 421 - -
Car12g00354 498 ProSiteProfiles G-patch domain profile. 296 342 IPR000467 GO:0003676
Car12g00354 498 MobiDBLite consensus disorder prediction 405 421 - -
Car12g00354 498 Coils Coil 44 64 - -
Car12g00354 498 MobiDBLite consensus disorder prediction 342 358 - -
Car12g00354 498 Pfam CCCH-type zinc finger 148 168 IPR041367 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00354 - - - cpep:111798451 885.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00287 Car12g00354 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00354 Car-Chr12:2254103 Car05g00287 Car-Chr5:1585138 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g608 . Blo12g01042 . Bda03g00112 . . Bma04g00104 . Cmo05g00345 Cmo12g00324 . . . Car12g00354 Sed03g1654 Cpe07g00329 . Bhi04g00065 Tan02g2778 Cmetu03g2063 . Hepe10g0207 . Lcy13g1843 . . . . . . . . . . Cone20ag0311 . . . Cme03g01563 . . . . . . . . . . . . Cma12g00371 . Car05g00287 Cpe11g00287 . . . . . . . . Cla08g01377 Cam08g1847 Cec08g1425 Cco08g1558 Clacu08g1542 . Cre08g1325 Lsi08g01259 . Chy03g01073 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010406 1 1 1 1 0 1 2 1 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4398 PF01585 G-patch 9.00E-13 CL0449 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00354 Car_Chr12 FPKM 39.038742 40.66011 59.299549 60.825485 26.112108 29.068598 27.301195 77.875427 77.65152 81.215965