Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00359 ATGAGGAATGTCGTCGCGCGCCTCAACCGCCACCGCTTGGCCACTCCGGCCTACCGAAATGTATGCCCTGACAATGATTTTGGAAAAAGCATATCATTGGGGTATTTGCAGGACATTTATGCTCCGAGGAGACGAAATGTTTCTCTGTTGATAAACTTGTTTCATCAAAACTCATTTTCTACAGGCTATTCAAGTGTACATGGTGAAAGGCCATCTGCAGAGTATGCGAAGTTGAGGAAGCAATTGCTGGAAAAGGAATTTGGGCATGCACTTGGAACTTACAGATCCAAAAGACTCTCCTCCATCTATCATTTTGGTCCATTTTTGGCCTTCTATAGAGCAGCAATTATTTCGTTCCATGTGTTCAACCTAACCATATGGCAGTTCTTTGTTCGTGACTTAAAAAAACGAGCTATTAAGCTTGGTCAGGCTTTGAGCACGAGACCAGATATATTGCCAACAGTTTATTGCCAAGAACTTGCAAGGTTACAGGATGAAATACCTCCATTTCCGACTCATAAAGCAATCAAATCTATTGAGAACCAGTTGGGACGTCCTGTTTCCCAAATTTTTGCTGATATTAGCTCAGAGCCCATTGCAGCTGCATCCTTAGGGCAGGTTTATAAGGCTCACCTGCATTCTGGAGAGCTTGTAGCAGTCAAGGTACAAAGGCCTGGCATGTCTCTTTCATTGACTCTTGATGCCTTGTTGTTCCAGATGATTGGTGGCCAACTAAAACGATTTGCAAAGGCTCGAAAAGATTTATTAGTAGCCGTTAATGAAATGGTCAGACACATGTTTGACGAAATCGATTATGTTCAAGAAGGGAAAAATGCTGAGCGTTTTCTCTCTCTCTATGGATGTCAACCATGCGGCGGTGAGAAGAGGTCTGCAGTCAATGGCACTCTTAAATATAAGAAATCAAGTGGTGTTAAAGTCCCCAAAATATTTTGGGACTATACTAGGACGGCTGTGCTTACAATGGAATGGATTGATGGAATAAAGCTTACTGATGAAATTGGGTTGCAAAAGGCCCATTTGAATAGAAGGGAGCTCATTGACCTGGGACTTTATTGCTCTTTGCGGCAATTGCTTGAGGTGGGGTTTTTTCATGCTGATCCACATCCAGGAAACCTTGTTGCTTCCGAGAATGGCTCTCTTGCATATTTTGATTTTGGGATGATGGGTGATATCCCTCGGCATTACCGTGTTGGACTGATTCAAGTGCTGGTGCACTTTGTTAATCGGGACTCGCTTGGGTTGGCCAATGATTTTCTTTCTTTGGGATTCATTCCTGAAGGCATTGATGTCCGATTAGTTTCTGATGCCCTAAACACATCATTTGGCGATGGAAAAAAACAGTCCCTGGATTTTCAGGGCGTAATGAACCAGCTATACAGTGTGATGTATGAATTTAATTTTTCCCTCCCTCCGGACTATGCCTTGGTCATAAGAGCTCTAGGGTCACTGGAAGGCACTGCCAAAGTCCTGGATCCTGAATTCAAGGTCTTAGAAAGTGCATATCCTTTTGTCATTGGGAGGCTTTTGGAAGATCCAAACCCTGATATGAGAAAAATTTTAAGGGAACTCCTCATCCGAAATGATGGATCCATTAGGTGGAATCGGCTCGAGCGCTTAGTTGCAGCCATTTCTGAACAGGCTGCCGAGTCGGGTGAGGAATCCTCCAAGGATAGTTCTTCAAATCCTCTAGGATGGAAATCATTTGACATGGAAGCTGTTGTCTCAGCAACTGAGGATCTTTTTCTATTCATTCTCTCCAAGAAGGGTTCAAGGGTACGTGTTTTCCTTATTCGGGACATCATCGGAGCAGTTGACATCGTTCTGCAAGATGAAGTTTTAGGGTGCTCATCGGATAAGAAGTATCAAACAAGATCTGAGGATGATGCTATGCTGGAAAGAGTTGTTCACGGGTTCCAGTGTCTCCGTGATGCAATAAAGTTAGCACCACGAGTGTGGACGGCTATGCTTTTTCGCATGGCATTAAAGCGGGAGGTTCATAGCTTCTCTCTGGACGTCGTTTCAAGCATTATGATGCATATTGGAAAAAAATCCCCTGACCGTCTTTGGATCCGTATTTCAAGATTCCTTCATGACTTAGAGAGAGACTACGATTCTAACAAAACATGA 2148 43.48 MRNVVARLNRHRLATPAYRNVCPDNDFGKSISLGYLQDIYAPRRRNVSLLINLFHQNSFSTGYSSVHGERPSAEYAKLRKQLLEKEFGHALGTYRSKRLSSIYHFGPFLAFYRAAIISFHVFNLTIWQFFVRDLKKRAIKLGQALSTRPDILPTVYCQELARLQDEIPPFPTHKAIKSIENQLGRPVSQIFADISSEPIAAASLGQVYKAHLHSGELVAVKVQRPGMSLSLTLDALLFQMIGGQLKRFAKARKDLLVAVNEMVRHMFDEIDYVQEGKNAERFLSLYGCQPCGGEKRSAVNGTLKYKKSSGVKVPKIFWDYTRTAVLTMEWIDGIKLTDEIGLQKAHLNRRELIDLGLYCSLRQLLEVGFFHADPHPGNLVASENGSLAYFDFGMMGDIPRHYRVGLIQVLVHFVNRDSLGLANDFLSLGFIPEGIDVRLVSDALNTSFGDGKKQSLDFQGVMNQLYSVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPEFKVLESAYPFVIGRLLEDPNPDMRKILRELLIRNDGSIRWNRLERLVAAISEQAAESGEESSKDSSSNPLGWKSFDMEAVVSATEDLFLFILSKKGSRVRVFLIRDIIGAVDIVLQDEVLGCSSDKKYQTRSEDDAMLERVVHGFQCLRDAIKLAPRVWTAMLFRMALKREVHSFSLDVVSSIMMHIGKKSPDRLWIRISRFLHDLERDYDSNKT 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2274781 2281716 + Carg03966-RA Car12g00359 157975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00359 715 ProSiteProfiles Protein kinase domain profile. 193 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00359 715 Pfam ABC1 atypical kinase-like domain 162 422 IPR004147 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00359 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101207577 1238.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00637 Car-Chr7:3230388 Car12g00359 Car-Chr12:2274781 1.75E-66 dispersed
Car12g00359 Car-Chr12:2274781 Car20g00587 Car-Chr20:3295430 2.91E-59 dispersed
Car04g01440 Car-Chr4:8337211 Car12g00359 Car-Chr12:2274781 3.87E-77 transposed
Car04g02032 Car-Chr4:16447822 Car12g00359 Car-Chr12:2274781 3.74E-104 transposed
Car05g00575 Car-Chr5:3367473 Car12g00359 Car-Chr12:2274781 4.55E-90 transposed
Car08g00909 Car-Chr8:6097231 Car12g00359 Car-Chr12:2274781 1.29E-94 transposed
Car11g01020 Car-Chr11:7192636 Car12g00359 Car-Chr12:2274781 2.28E-99 transposed
Car12g00359 Car-Chr12:2274781 Car05g00283 Car-Chr5:1569410 1.13E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g622 . . . . Bpe02g01271 . . . . Cmo12g00328 . . . Car12g00359 Sed03g1658 Cpe07g00333 . Bhi04g00073 Tan02g2784 Cmetu03g0254 . Hepe10g0203 . Lcy13g1848 . . . . . . . Cone4ag1726 . . . . . . Cme03g01558 . . . . . . . . . . . . Cma12g00376 . . . . . . . . . . . Cla08g01381 Cam08g1852 Cec08g1430 Cco08g1563 Clacu08g1547 . Cre08g1330 Lsi08g01265 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012518 0 3 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00359 Car_Chr12 FPKM 1.128079 1.20346 3.34293 3.03327 1.904045 0.874793 1.424475 0.23451 0.164076 0.0