Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00369 TTTTGTGGTCACCGTTTGGTTTTCGACCGCTTTAGCAAATCGCGACTCTCTCTCTCTTTCTCTTTCTCTTTCTCTCTCTCTCTCTTTGGGTTTCAGACCTCACCGAATCTTCGAGAAAGGAGATACGGCACCATGTCTTCAGGGAGGAAGATCACGTTGAAGAGCTCCGATGGCGAGATCTTTGAGGTTGACGAAGCCGTCGCCTTGGAGTCACAGACGATCAAGCACATGATAGAAGACGATTGCGCCGATAGTGGAATCCCCCTCCCTAACGTCAACAGCAAGATCTTGTCCAAGGTTATCGAGTACTGCAAGAAGCACGTCGAGTCTCCCAAGCCGGAGGATCGTGCTGGCTCCGTCGAGGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCGACCTTGTTCGATCTCATTCTGGCTGCAAACTATCTCAATATCAAGAGCTTGCTAGATTTGACTTGTCAGACGGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAATGACTTCACACCCGAGGAAGAGGAGGAAGTTCGTAGGGAGAATCAATGGGCGTTCGAGTAA 606 50.0 FCGHRLVFDRFSKSRLSLSFSFSFSLSLFGFQTSPNLRERRYGTMSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2357661 2360213 + Carg03976-RA Car12g00369 157985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00369 201 Pfam Skp1 family, tetramerisation domain 50 108 IPR016073 GO:0006511
Car12g00369 201 Pfam Skp1 family, dimerisation domain 152 199 IPR016072 GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00369 K03094 SKP1, CBF3D; S-phase kinase-associated protein 1 - csv:101217906 308.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00107 Car-Chr6:710586 Car12g00369 Car-Chr12:2357661 6.46E-75 dispersed
Car12g00369 Car-Chr12:2357661 Car16g01179 Car-Chr16:10012080 5.08E-86 dispersed
Car12g00369 Car-Chr12:2357661 Car05g00270 Car-Chr5:1488388 1.97E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1164 . . . Bda03g00294 . Bpe04g00254 Bma04g00254 . . . . . . Car12g00369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000912 2 2 2 2 2 3 4 3 3 2 3 3 3 3 3 3 3 2 5 3 2 3 3 3 2 3 3 4 3 4 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00369 Car_Chr12 FPKM 11.783863 13.031744 7.776505 6.563232 11.662935 10.178651 13.833639 2.541332 2.592433 3.292902