Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car12g00373	ATGGCCAAACTTTCTTTCGTATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCATCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAACACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTCTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGATGCAACGTGGGAGGAGCTGGGGACATCCAAGCGGTGTCGATCAAGGGCTCGAAATCAAGCCAATGGATGGCGATGTCGAGGAATTGGGGCATGAATTGGCAGTCGAATTCGTATCTAAATGGGCAAACTCTGTCGTTCAAGGTGACCACGACCGACGGGCAGACACAAGTGTTCAACAACGTTGTCCCTTCGAGCTGGAGGTTTGGGCAAACGTTTGGGAGCAGTGTCCAATTCAGCTGA	603	54.73	MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGGCNVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFGQTFGSSVQFS	200

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
12	2376033	2378371	-	Carg03980-RA	Car12g00373	157989

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car12g00373	200	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	123	195	IPR007117	-
	Car12g00373	200	Pfam	Expansin C-terminal domain	123	184	IPR007117	-
	Car12g00373	200	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	47	123	IPR007112	-
	Car12g00373	200	Pfam	Lytic transglycolase	64	111	IPR009009	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Car12g00373	Car-Chr12:2376033	Car04g00102	Car-Chr4:560825	1.88E-78	dispersed
	Car12g00373	Car-Chr12:2376033	Car05g00269	Car-Chr5:1485984	1.39E-118	wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car12g00373	-		-	rcu:8267825	276.174