Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00379 ATGAGGAAGTGGACGATTGCTTCTGCTCTTCTCCTTCTTTGTTTTCTCTCTCTCGTACCGGATCAAGGTCCTAGATTTCATGCCAAGGCCGATGGTGACGCCGACGAGGTTGTAGATCCACCGAAGGTTGAGGAAAAAATCGGGGCCGTTCCACATGGTCTCTCTACTGATTCTGATGTTGTCAAGAGGGAGTCGGAGTCTATCTCGAAGAGATCTCTTCGCAGCAGCGCGGAGAAATTTGAGTTCCAAGCTGAGGTGTCTCGTCTCATGGACATCATTATCAATTCCTTATATAGTAACAAAGACATTTTCCTCCGAGAATTGATCTCCAACGCTTCTGATGCGTTGGATAAGATTAGGTTCCTCTCCCTGACTGATAAAGAGATATTGGGTGAGGGCGACAACTCAAAGCTTGAGATTCAAATTAAGTTGGACAAGGAGAACAAAGTCCTTTCGATTCGCGACAGAGGTATTGGTATGACAAAAGAGGATTTGGTCAAGAACTTGGGAACCATCGCAAAATCTGGAACTTCAGCATTCGTGGAAAAAATGCAGACAAGCGGAGATCTCAATCTTATTGGGCAATTTGGAGTGGGTTTCTACTCCGTGTACCTTGTGGCTGACTACGTTGAAGTGATTAGCAAACACAATGATGACAAACAACATGTGTGGGAATCGAAGGCTGATGGAGCATTCGCAATCTCTGAAGATACGTGGAACGAACCTTTAGGCCGTGGAACTGAAATTAGACTACACCTTAGAGATGAAGCTCAAGAATACTTGGAGGAGGGCAAACTGAAAGATTTGGTGAAGAGATATTCAGAATTTATCAACTTCCCTATTTATATTTGGGGAAGCAAGGAGATTGATGTCGAGGTTCCTGCAGATGAGGATGAATCCAACGACGGAGAAGAATCACCCGAAGATAAGAGTGAAGAAGAAGATGATGCTGAGAAGAGTGAAGATGAAGATTCTGAGAAGCCAAAGACAAAGAAAGTTAAAGAAACAACTTATGAATGGGAGCTTTTGAATGATGTGAAAGCCATATGGCTGCGGAGTCCCAAGGAGGTGACAGAAGAAGAGTATACTAAATTCTACCGTTCTCTTGCTAAGGATTTTAGTGATGACAAGCCTATGGCATGGAGTCACTTTAACGCTGAAGGTGATGTTGAGTTCAAAGCTGTTCTGTTTGTACCTCCTAAGGCTCCTCATGATCTATACGAGAGCTATTACAACAGCAAAAAATCCAACTTGAAGTTGTATGTTCGAAGGGTTTTCATCTCAGACGAGTTCGATGAGCTCCTGCCGAAGTATTTGAGCTTTCTGCTGGGTCTTGTTGATTCTGATACTCTACCTCTCAACGTTTCACGAGAAATGCTTCAACAACACAGCAGCTTGAAGACAATTAAGAAGAAACTCATCCGCAAGGCCCTTGACATGATCCGTAAAATTGCTGAAGAGGATCCTGATGAGTCCAGTGACAAGGAGAAGAAAGATGCTCAGAAGAGTAGTGGTGATGATGATGAGAAGAAAGGCCAATATACTCGATTCTGGAACGAGTTTGGTAAATCAATCAAACTGGGTATTATTGAGGATGCAACTAACAGAAACCGTCTCGCAAAACTGCTCCGATTCGAGAGTTCCAAATCTGATGGAAAATTGACTTCATTGGATCAATACATCTCAAGAATGAAATCAGGACAGAAGGATATCTTTTACATCACTGGATCAAGCAAGGAGCAGTTGGAGAAATCCCCATTTCTTGAGCGACTTAAGAAGAAGAACTATGAGGTCATCTTTTTCACAGACCCAGTGGATGAGTACTTGATGCAATATCTCATGGACTACGAAGACAAAAAATTCCAAAACGTATCAAAGGAGGGTCTCAAACTCGGCAAAGACTCAAAGGACAAGGAGCTCAAGGAATCCTTCAAGGATCTTACTAAGTGGTGGAAGACTCACCTTTCTTTCGACAATGTTGATGATGTCAAAGTTTCAAATCGATTGGACAACACACCTTGTGTGGTTGTGACATCAAAGTATGGATGGAGCGCTAACATGGAAAGGATCATGCAGTCTCAAACCCTATCAGATGCTAACAAGCAAGCATACATGCGCGGTAAGAGGGTACTCGAAATCAACCCGAGGCACCCGATCATCAAGGATCTTCGTGAGAAAATAGTCAGGGATCCAGAGGATGAGGGCGCAAAGAAGGCAGCAAAACTGATGTACCAAACAGCTCTTCTAGAAAGTGGATTTATTCTCAATGACCCCAAGGACTTTGCCGCCCAAATCTACGACACTGTGAAGACTAGCTTAGAAATCAGTCCCGACGCGGCCGTTGAGGAGGAAGATGAAGTAGAGGTCGAGGCCGAGACCACCTCGAAGGAAGCAGACGACAAGTCCGAAGCTGAAGCAGAAGACAAGTCTGTAAAGGACGAGTTGTAG 2448 43.83 MRKWTIASALLLLCFLSLVPDQGPRFHAKADGDADEVVDPPKVEEKIGAVPHGLSTDSDVVKRESESISKRSLRSSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEILGEGDNSKLEIQIKLDKENKVLSIRDRGIGMTKEDLVKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAQEYLEEGKLKDLVKRYSEFINFPIYIWGSKEIDVEVPADEDESNDGEESPEDKSEEEDDAEKSEDEDSEKPKTKKVKETTYEWELLNDVKAIWLRSPKEVTEEEYTKFYRSLAKDFSDDKPMAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNSKKSNLKLYVRRVFISDEFDELLPKYLSFLLGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESSDKEKKDAQKSSGDDDEKKGQYTRFWNEFGKSIKLGIIEDATNRNRLAKLLRFESSKSDGKLTSLDQYISRMKSGQKDIFYITGSSKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKDKELKESFKDLTKWWKTHLSFDNVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDANKQAYMRGKRVLEINPRHPIIKDLREKIVRDPEDEGAKKAAKLMYQTALLESGFILNDPKDFAAQIYDTVKTSLEISPDAAVEEEDEVEVEAETTSKEADDKSEAEAEDKSVKDEL 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2414917 2419740 - Carg03986-RA Car12g00379 157995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00379 815 MobiDBLite consensus disorder prediction 778 793 - -
Car12g00379 815 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Car12g00379 815 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Car12g00379 815 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Car12g00379 815 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Car12g00379 815 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
Car12g00379 815 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Car12g00379 815 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Car12g00379 815 PIRSF HSP90_HTPG 54 814 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Car12g00379 815 Hamap Chaperone protein HtpG [htpG]. 75 770 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Car12g00379 815 SUPERFAMILY HSP90 C-terminal domain 646 768 IPR037196 -
Car12g00379 815 MobiDBLite consensus disorder prediction 294 332 - -
Car12g00379 815 SMART HKATPase_4 100 257 IPR003594 -
Car12g00379 815 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 20 806 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Car12g00379 815 MobiDBLite consensus disorder prediction 485 511 - -
Car12g00379 815 SUPERFAMILY Ribosomal protein S5 domain 2-like 346 627 IPR020568 -
Car12g00379 815 Gene3D - 345 539 - -
Car12g00379 815 Gene3D - 540 626 - -
Car12g00379 815 MobiDBLite consensus disorder prediction 794 815 - -
Car12g00379 815 PANTHER BNAA08G14800D PROTEIN 20 806 - -
Car12g00379 815 Gene3D - 65 300 IPR036890 -
Car12g00379 815 Gene3D - 627 773 IPR037196 -
Car12g00379 815 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
Car12g00379 815 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Car12g00379 815 MobiDBLite consensus disorder prediction 294 321 - -
Car12g00379 815 Pfam Hsp90 protein 259 798 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Car12g00379 815 CDD HATPase_Hsp90-like 87 277 - -
Car12g00379 815 MobiDBLite consensus disorder prediction 777 815 - -
Car12g00379 815 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00379 K09487 HSP90B, TRA1; heat shock protein 90kDa beta - csv:101203607 1426.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00261 Car12g00379 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00999 Car-Chr11:6916339 Car12g00379 Car-Chr12:2414917 1.44E-52 dispersed
Car12g00379 Car-Chr12:2414917 Car15g00797 Car-Chr15:4525519 0 dispersed
Car12g00379 Car-Chr12:2414917 Car05g00261 Car-Chr5:1451583 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1132 . . . . . . . . Cmo05g00316 Cmo12g00353 . . . Car12g00379 . . Cpe07g00357 Bhi04g02197 . . . . . . . . . . . . . Cone4ag1980 Cone7ag1897 . . . . . . . Blo18g00775 . Bda01g01534 Bpe02g01732 . Bma01g00723 . . . . . Cma05g00315 Car05g00261 . Cpe11g00262 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006598 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 3 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00379 Car_Chr12 FPKM 5.97416 6.177454 17.164059 14.110156 0.0 0.0 0.0 3.467211 2.272868 3.51726