Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00381 ATGGAGGCCCGAATTTCATTCCTGTTGGGTGTTTCGATTTTGATGCTTTTGCTACCAGGCGGGTTTCCGACGAGCATTACTTTTGTGAACAAATGTGGATTTACAGTCTGGCCGGGCATTCTGTCGAACGGTGGCGTTCCGCCGCTTTCCACCACTGGTTTCTCTCTCGAGTCTGGAGAATCCAAGACGCTGCCTGCGCCGACGTCTTGGGGCGGGCGGTTCTGGGGCCGAACACTCTGTTCTGAAGATTCCACCGGGAAATTCTCCTGCGGTACTGGCGATTGTGGTTCCGACAAACTTGAGTGCGCCGGAAATGGAGCGACGCCTCCGGCGACTTTGGCGGAATTTACACTCGACGGCTCCGGTGGCCTTGATTTCTTCGACGTCAGTCTGGTCGACGGTTACAATCTTCCGATGATGGTAGTGCCACAAGGCGGCTCCGGTGACAATTGCACTAGCACCGGCTGCGTTGTGGATCTAAACGATGCGTGTCCTTCGGAGCTGCGCGTGATGGGCTCCGACGGAAGAGAGAGCGTCGCGTGTAAAAGCGCGTGTGGTGCCTTCAACCAACCGCAGTATTGTTGTACAGGCGCGTACCAAACACCGGATACTTGTCAGCCGTCGATGTACTCTCAGATCTTCAAGAAAGCGTGCCCACGCGCTTATAGCTACGCGTACGATGACAAGACGAGTACCTTCACATGCGCCAGTGCCGATTATGTCATCACCTTCTGTCCATCGCCAAACACCAGCCAAAAGTCATCCGAGGCACAGAACTCACCGGCGACGGCGAACCCATCTTCCAGCGGCGATGTTGGTATGGTGTACGAAGGCGCATCCCTGATCCAAACCGACGCAGCGCCGCCGCGTATGGCCGGAATATCAGCGGTTGGCGTTTCTGGAGCTCGATTTACACTTATAAACAGATGCGATTACACTGTTTGGCCGGGAATTCTCGGCAATACCCAATTGGAATCTACTGGATTCGAGCTTTCTCCGGGGGCGGCGCGTTCATTCCACGCGCCTCCAGGGTGGTCCGGCAGATTCTGGGGTCGGACCGGCTGTTTGTTCGACCCAGCCACTGGTAAGGGCAGCTGCCAGACTGCTGACTGTGGATCAAATCAAATGGAATGCAATGGCGCCGGAGCAACGCCGCCGGCTACTCTGGCTGAGTTCACAATCGGCGCCAGTGCCGGCGCGCAGGACTTTTATGACGTCAGCTTGGTCGACGGCTACAACATTCCGATGGTCATTGACGCCATGGGCGGTAACGGCGTGTGTCAGTCGACTGGGTGTGCGGTGGATTTGAACCGGCGTTGCCCTGTAGAGCTGCGTGCCGGCGATGGGAAGGCGTGCAGGAGTGCGTGTGAGGCGTTTGGGAACCCGGAATATTGCTGTAGCGGCGCGTATAATTCACCCGCCGCCTGTAAGCCGTCAGCGTACTCGGAAATATTCAAATCAGCTTGCCCCAAATCATATAGCTATGCCTTTGATGATGCAACAAGCACTTTTACTTGCAGTGGTGCTGATTACACCATTACATTCTGCCCTTCATCAAGGTAA 1563 55.66 MEARISFLLGVSILMLLLPGGFPTSITFVNKCGFTVWPGILSNGGVPPLSTTGFSLESGESKTLPAPTSWGGRFWGRTLCSEDSTGKFSCGTGDCGSDKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMMVVPQGGSGDNCTSTGCVVDLNDACPSELRVMGSDGRESVACKSACGAFNQPQYCCTGAYQTPDTCQPSMYSQIFKKACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSEAQNSPATANPSSSGDVGMVYEGASLIQTDAAPPRMAGISAVGVSGARFTLINRCDYTVWPGILGNTQLESTGFELSPGAARSFHAPPGWSGRFWGRTGCLFDPATGKGSCQTADCGSNQMECNGAGATPPATLAEFTIGASAGAQDFYDVSLVDGYNIPMVIDAMGGNGVCQSTGCAVDLNRRCPVELRAGDGKACRSACEAFGNPEYCCSGAYNSPAACKPSAYSEIFKSACPKSYSYAFDDATSTFTCSGADYTITFCPSSR 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2434079 2439259 - Carg03988-RA Car12g00381 157997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00381 520 ProSiteProfiles Thaumatin family profile. 301 517 IPR001938 -
Car12g00381 520 ProSiteProfiles Thaumatin family profile. 26 246 IPR001938 -
Car12g00381 520 MobiDBLite consensus disorder prediction 250 270 - -
Car12g00381 520 Pfam Thaumatin family 30 246 IPR001938 -
Car12g00381 520 Pfam Thaumatin family 308 517 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00808 Car12g00381 CCT
Car09g00086 Car12g00381 CCT
Car05g00808 Car12g00381 ECH
Car09g00086 Car12g00381 ECH
Car01g00899 Car12g00381 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00260 Car-Chr5:1448604 Car12g00381 Car-Chr12:2434079 1.22E-90 dispersed
Car06g00648 Car-Chr6:3885548 Car12g00381 Car-Chr12:2434079 1.59E-40 dispersed
Car12g00381 Car-Chr12:2434079 Car20g00665 Car-Chr20:3747654 1.45E-43 dispersed
Car15g01092 Car-Chr15:8555465 Car12g00381 Car-Chr12:2434079 2.75E-12 dispersed
Car01g01550 Car-Chr1:12961740 Car12g00381 Car-Chr12:2434079 1.11E-61 wgd
Car12g00381 Car-Chr12:2434079 Car03g00627 Car-Chr3:5720392 3.86E-101 wgd
Car12g00381 Car-Chr12:2434079 Car05g00259 Car-Chr5:1442406 6.59E-88 wgd
Car12g00381 Car-Chr12:2434079 Car07g00370 Car-Chr7:1850908 2.60E-43 wgd
Car12g00381 Car-Chr12:2434079 Car09g00086 Car-Chr9:437417 1.60E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00381 - - csv:101204094 558.91