Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00390 ATGTTGAACGCCGTCGAAGATCTCCTCCTCCGTCACGGACACTCCGATTTCCGATCACATCTCCTTCCTTCTCACTCTCACCATCGCGGCGACATGTCCTTGTCTTCGTCTTCTGCTTCTTCTTCTCTTGCTCGACCTATTCCTCAGTGTTTCCGTCAGTATCATCGATCTTCTCCGCCGTCGGATCAATCCAACGCTTGTGACGGTCGTCTTGCTCTCGACGCACATTCTACAGTTGCTATGCTCGACTTGAAACGGACATATGATATTAATGACTCTGAGGCTTTGGCTAGCAAACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCAGTATCTAATGCAACTGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAGGACTAAAAAATCTACAGATGAGAATCTTGATGGTCCTAATTTATCTACAAACGGTCGGTACGACAGCTCTTTAGGCTTCTTGACGAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATCTAAATAAAACGGCGGACATATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAAAAAACCACCACGAATCACATACGTTGGAAGGGAGGCGTGAGGCATGAGGCTCAAGAGCTCAACGATCAAGTTGGTAGATTTAAGGCTGAAGTTAAGAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGAAAATCACAGAAAATCATCCCTTCAAACTTTTTACTCATATCAACGACACATTTTGCTTCTTTCGTTCAATATTTGTCCCTCCTGGATTATCAGGAATCTTTTTATGACAGAAGAAGATATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGACCGATTGATTTGACTGAAAAACAAGAGCTGGAAGAAAGCACTTTCCACCAAGAGAAAGTGTGCTCTGAACGACAGAAGAATCATAAGATATCTACCAACGATACTTATTGTTCTTCTTCTTTCCAAGAGTTTCAGGGAATGCAGAGAATTTTACCTTTATATAATAATATGGACGATGATTATTGGTTTGAATCAAATTCTCAAGTGAGCATAACGCATTTATGGGGTGAAGAACACAACTTTTAA 1317 40.93 MLNAVEDLLLRHGHSDFRSHLLPSHSHHRGDMSLSSSSASSSLARPIPQCFRQYHRSSPPSDQSNACDGRLALDAHSTVAMLDLKRTYDINDSEALASKRAVASEQRMRSNDSSCEPVSNATEKQNKKLKLQKNSKSRTKKSTDENLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADILKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGVRHEAQELNDQVGRFKAEVKSLYADERRLDELIRMKQELLRNLEENENHRKSSLQTFYSYQRHILLLSFNICPSWIIRNLFMTEEDILQIPCFKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLTEKQELEESTFHQEKVCSERQKNHKISTNDTYCSSSFQEFQGMQRILPLYNNMDDDYWFESNSQVSITHLWGEEHNF 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2480051 2483825 + Carg03998-RA Car12g00390 158006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00390 438 Pfam E2F transcription factor CC-MB domain 239 361 IPR032198 GO:0046983
Car12g00390 438 PANTHER TRANSCRIPTION FACTOR E2F 301 435 IPR015633 GO:0000978|GO:0006357
Car12g00390 438 PANTHER TRANSCRIPTION FACTOR E2F 22 275 IPR015633 GO:0000978|GO:0006357
Car12g00390 438 MobiDBLite consensus disorder prediction 107 125 - -
Car12g00390 438 SMART E2F_TDP_2 157 222 IPR003316 GO:0005667|GO:0006355
Car12g00390 438 Pfam E2F/DP family winged-helix DNA-binding domain 159 222 IPR003316 GO:0005667|GO:0006355
Car12g00390 438 Gene3D - 152 224 IPR036388 -
Car12g00390 438 PANTHER TRANSCRIPTION FACTOR E2FC 22 275 - -
Car12g00390 438 PANTHER TRANSCRIPTION FACTOR E2FC 301 435 - -
Car12g00390 438 Gene3D - 228 366 - -
Car12g00390 438 CDD E2F_DD 233 360 IPR032198 GO:0046983
Car12g00390 438 SUPERFAMILY E2F-DP heterodimerization region 234 362 IPR037241 -
Car12g00390 438 Coils Coil 228 272 - -
Car12g00390 438 MobiDBLite consensus disorder prediction 21 42 - -
Car12g00390 438 SUPERFAMILY Winged helix DNA-binding domain 157 220 IPR036390 -
Car12g00390 438 MobiDBLite consensus disorder prediction 101 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00390 K06620 E2F3; transcription factor E2F3 - csv:101211469 604.364
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00249 Car12g00390 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00390 Car-Chr12:2480051 Car20g00133 Car-Chr20:743144 5.39E-45 dispersed
Car12g00390 Car-Chr12:2480051 Car05g00249 Car-Chr5:1391206 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4399 PF16421 E2F_CC-MB 2.60E-20 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00390 Car_Chr12 FPKM 1.502832 1.301351 1.319667 1.162531 1.079676 1.399867 1.07337 4.337668 4.534727 5.222343