Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00396 ATGGATGATAGCGGGCATCGGGAGAATGGAAGGCACAAAGCAGAGCAGTATAAGTCAGCTCAGGGTCAGTGGATGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCAATAATGGCCGAGAGAGATGCAGCCATTCAAGAGAGAAACTTGGCCCTCTCTGAGAAGAAGGCTGCAATAGCAGAACGGGACATGGCTTATCTACAGCGAGATGCTGCAATTGCAGAGAGGAACAATGCTCTATTGGAAAGAGACAATGCCATAGCAACTCTTCAGTATCGTGAAAATTCCCTCACAAACAACAATTTATCATGTCCACCAGGATGCCAAATCGCAAGGGGAGTGAAGCATATACACCATCCCCAGCAACAGCAGCAGCAGCAGCATACACATCATCATGTGCCTCACATGAATGATAGCAACTACAATTCGAGAGAATTGCATGCCAATGATGCTTGCCCTGTATCGTCCCAAGTTGCTTCGGAATCGACAAAGGTGCGGCGAAACAAGCGAACGAAAGAGGATAATAAGACAATTACAGCACCAAACAAGAAGGTTTCTAAAGCTCCAAGGAAGGTCAAAAGAGAAGCTGAAGACTTGAATAAGATAATGCTGGGCAAGTCACAAGAATGGAAGGATGGGATTGGTATAGTGAGTGGCGGCGATGATCTTAACAAGCATCTGGTCGTGTCAAAGTCGGATTGGAAAGGGCAGGATCTGGGGTTGAACCAGGTAGCCTTTGATGAATCAACCATGCCAGCTCCAATATGCTCCTGCACAGGAGTTATAAGACAATGCTACAAATGGGGAAACGGTGGATGGCAATCTGCTTGTTGTACTACCACTGTGTCAATGTATCCATTACCAGCAGTTCCCAACAAACGCCACGCCAGAGTCGGTGGCCGAAAGATGAGCGGAAGCGCTTTCAACAAGCTGCTCAGCCGCCTTACAGCTGAAGGCCATGACCTATCTGCACCAGTTGATCTTAAGAATCACTGGGCAAAACATGGAACAAATCGTTACATCACCATCAAATAG 1038 46.92 MDDSGHRENGRHKAEQYKSAQGQWMMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSLTNNNLSCPPGCQIARGVKHIHHPQQQQQQQHTHHHVPHMNDSNYNSRELHANDACPVSSQVASESTKVRRNKRTKEDNKTITAPNKKVSKAPRKVKREAEDLNKIMLGKSQEWKDGIGIVSGGDDLNKHLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTVSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLTAEGHDLSAPVDLKNHWAKHGTNRYITIK 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2531359 2532480 - Carg04004-RA Car12g00396 158012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00396 345 MobiDBLite consensus disorder prediction 164 181 - -
Car12g00396 345 Pfam GAGA binding protein-like family 1 345 IPR010409 -
Car12g00396 345 Coils Coil 58 85 - -
Car12g00396 345 MobiDBLite consensus disorder prediction 1 15 - -
Car12g00396 345 MobiDBLite consensus disorder prediction 1 23 - -
Car12g00396 345 MobiDBLite consensus disorder prediction 152 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00396 - - - csv:101207697 622.854
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00242 Car12g00396 CCT
Car05g00242 Car12g00396 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00895 Car-Chr11:5584828 Car12g00396 Car-Chr12:2531359 1.59E-112 dispersed
Car12g00396 Car-Chr12:2531359 Car15g00827 Car-Chr15:4712996 1.28E-39 dispersed
Car12g00396 Car-Chr12:2531359 Car19g00543 Car-Chr19:6962433 2.15E-72 wgd
Car12g00396 Car-Chr12:2531359 Car05g00242 Car-Chr5:1349930 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1060 . . . . . . . . Cmo05g00298 Cmo12g00369 . . . Car12g00396 . . Cpe07g00376 Bhi04g00239 . . . . . . . . . . . . . . . . . . . . . Blo17g00751 . Bda08g01227 Bda01g01528 Bpe02g01724 Bpe05g00134 . . . . . . Cma05g00293 Car05g00242 . Cpe11g00243 . . . . . . . . . . . . . . . . Csa02g02118 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car15g00827 CST 384 664 BBR/BPC Transcription factor family AT2G01930 54.7 7.6e-81 297.7
Car04g02085 CST 255 534 BBR/BPC Transcription factor family AT2G01930 53.7 7.1e-79 291.2
Car15g00827 CST 544 664 BBR/BPC Transcription factor family AT2G35550 60.3 7.2e-42 167.9
Car04g02085 CST 425 534 BBR/BPC Transcription factor family AT2G35550 64.5 6.1e-41 164.9
Car12g00396 CCT,ECH 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.4e-37 153.7
Car11g00895 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.1e-37 152.5
Car05g00242 CCT,ECH 236 345 BBR/BPC Transcription factor family AT2G35550 60.9 4.1e-37 152.1
Car19g00543 . 89 195 BBR/BPC Transcription factor family AT2G35550 58.9 7.0e-37 151.4
Car12g00396 CCT,ECH 239 345 BBR/BPC Transcription factor family AT1G68120 57.9 2.2e-37 153.3
Car11g00895 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.5 1.1e-82 303.9
Car05g00242 CCT,ECH 24 345 BBR/BPC Transcription factor family AT2G21240 51.8 6.7e-64 241.5
Car19g00543 . 45 195 BBR/BPC Transcription factor family AT2G21240 71.5 1.1e-61 234.2
Car11g00895 . 1 313 BBR/BPC Transcription factor family AT4G38910 60.1 4.2e-71 265.4
Car05g00242 CCT,ECH 24 345 BBR/BPC Transcription factor family AT4G38910 51.5 8.2e-59 224.6
Car19g00543 . 64 195 BBR/BPC Transcription factor family AT4G38910 72.7 7.1e-55 211.5
Car12g00396 CCT,ECH 91 345 BBR/BPC Transcription factor family AT5G42520 64.3 5.2e-82 301.6
Car05g00242 CCT,ECH 111 345 BBR/BPC Transcription factor family AT5G42520 58.3 6.0e-78 288.1
Car19g00543 . 82 195 BBR/BPC Transcription factor family AT5G42520 75.9 6.9e-50 194.9
Car15g00827 CST 544 664 BBR/BPC Transcription factor family AT2G35550 60.3 7.2e-42 167.9
Car04g02085 CST 425 534 BBR/BPC Transcription factor family AT2G35550 64.5 6.1e-41 164.9
Car12g00396 CCT,ECH 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.4e-37 153.7
Car11g00895 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.1e-37 152.5
Car05g00242 CCT,ECH 236 345 BBR/BPC Transcription factor family AT2G35550 60.9 4.1e-37 152.1
Car19g00543 . 89 195 BBR/BPC Transcription factor family AT2G35550 58.9 7.0e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4401 PF06217 GAGA_bind 8.70E-106 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00396 Car_Chr12 FPKM 22.89986 23.416574 29.661846 31.323843 10.4777 10.459394 12.168452 9.625569 10.037144 11.972462