Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00398 ATGCTCCTCCAATTTATTCTCTTCGCTCAATTCACACTCTTCACTCCGCCGTCGCCGCTGTACGCCGACGACGGCGGCGGCGGCCGGTGGGAGCTTCTGCAAAACGACGTCGGAGTTCTGCCAATGCACATGCAGTTACTTCACAGTGACAGAGTCGTTATATTTGACAGAACCGACTTCGGCACCTCTAATTTACCGTTACCGGAAGGGAAATGCCGAATGGATCCAAACGACGTCGCTTTGAAACTTGATTGCACTGCTCATTCTCTCGAATACGACGTCGCTTCCAACACATTTCGGCCACTCATGGTTCAGACGGATGTTTGGTGCTCCTCTGGCGCCGCCGCGAGCGACGGAACTCTGGTTCAGACGGGTGGATTCAACGACGGAGATCGGAGAGCGAGAGTCTTTAAGCCGTATCCTAATGGCTCGGATTGGGAGGAGATTCCTTTTGCACTAAACGTCCGCCGGTGGTACGCGACGAACCACATTCTGCCCGACGGCCGGCAAATTGTAATCGGCGGACGGCGGCAATTCAGCTACGAATTTTTCCCGAAAATCGGCGGCGCTTCCAGGGCGTATAGCATTCCGTTCTTGGCTGAGACGAACGATCAATTCATCGAAAATAATTTATATCCGTTTGTATTTTTGAATGTCGACGGAAATTTGTTCATTTTCGCAAATAATCGGTCAATTTTGTTTGATTACGCGCGGAATAAGGTGATCAGGAATTTTCCGGCGATCCCCGGCGGCGATCCACGGTGTTACCCAAGCACCGGCTCCGCCGTGCTCCTCCCGTTGAGGAATTTACATGCGGCGGCGATTGAAGCAGAGGTTTTGATTTGTGGCGGCGCTCCGAAGGGAGCTTATAACAGAGCCATGAATCGGATCTTCGTTCGAGCTTTGAATTCGTGCAGCCGAATTAAAATAACGGATTCAAACCCTCAATGGGTTACAGAAACAATGCCAATGAGTAGGGTAATGGGGGACATGATTTTGCTTCCAAACGGCGACGTTTTAATTATCAATGGTGCCGGGTCAGGAACTGCCGGGTGGGATAACTCTCGCGATCCAATTTTGAGCCCGATCGTGTATCGACCCACTGACCCGATTGGTTCGAGGTTCCGGTTGCTCAACCCGAGTACGATCCCTCGTCTTTATCATTCAACAGCAGTGCTGCTTCGTGATGGTCGTGTTTTGGTTGGTGGGAGCAATCCAAATGTATATTATAACTTCACAGGCGTGCCATTTCCAACAGAGTTGAGATTAGAAGCATTTTCGCCGCCATATTTAGATCCGAAATGTGAAAATCTACGACCAAAAATCTTGTCACCGTCGTCTCAAACCACTGTGAGATACGGACGACCGTTGACTATTCGGTTCAATGTCAACATCACCCGTGGTGTTAGATTGGATATAGTGGCAGTGACAATGATCGCACCACCATTCAACACGCATTCGTTCTCCATGAGTCAACGATTGTTAGTGATCGGTGGCGAGTACGTGACCAAAGTGAGAAATGTCGCTGCGACGTGGGATGTCCACGTTAACATGACCAACTCGAGTACCATCGCTCCACCGGGGTATTACCTCGTGTTTGTAATTCATCGTGAAATTCCAAGCAAGGGCATTTGGATCCGAATTGTGTAA 1650 49.76 MLLQFILFAQFTLFTPPSPLYADDGGGGRWELLQNDVGVLPMHMQLLHSDRVVIFDRTDFGTSNLPLPEGKCRMDPNDVALKLDCTAHSLEYDVASNTFRPLMVQTDVWCSSGAAASDGTLVQTGGFNDGDRRARVFKPYPNGSDWEEIPFALNVRRWYATNHILPDGRQIVIGGRRQFSYEFFPKIGGASRAYSIPFLAETNDQFIENNLYPFVFLNVDGNLFIFANNRSILFDYARNKVIRNFPAIPGGDPRCYPSTGSAVLLPLRNLHAAAIEAEVLICGGAPKGAYNRAMNRIFVRALNSCSRIKITDSNPQWVTETMPMSRVMGDMILLPNGDVLIINGAGSGTAGWDNSRDPILSPIVYRPTDPIGSRFRLLNPSTIPRLYHSTAVLLRDGRVLVGGSNPNVYYNFTGVPFPTELRLEAFSPPYLDPKCENLRPKILSPSSQTTVRYGRPLTIRFNVNITRGVRLDIVAVTMIAPPFNTHSFSMSQRLLVIGGEYVTKVRNVAATWDVHVNMTNSSTIAPPGYYLVFVIHREIPSKGIWIRIV 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2536076 2537725 - Carg04006-RA Car12g00398 158014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00398 549 Pfam Galactose oxidase-like, Early set domain 439 548 IPR015202 -
Car12g00398 549 Pfam Glyoxal oxidase N-terminus 42 284 IPR009880 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00398 - - - csv:101208596 906.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00240 Car12g00398 CCT
Car09g00108 Car12g00398 CCT
Car01g01524 Car12g00398 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00077 Car-Chr10:343517 Car12g00398 Car-Chr12:2536076 1.37E-147 dispersed
Car12g00398 Car-Chr12:2536076 Car12g01230 Car-Chr12:11682499 7.22E-153 dispersed
Car01g01524 Car-Chr1:12850426 Car12g00398 Car-Chr12:2536076 0 wgd
Car12g00398 Car-Chr12:2536076 Car05g00240 Car-Chr5:1342923 0 wgd
Car12g00398 Car-Chr12:2536076 Car09g00108 Car-Chr9:533104 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1054 Blo01g01587 Blo12g00894 Bda01g00501 Bda03g00277 . Bpe04g00233 Bma04g00235 Bma01g02356 Cmo05g00296 Cmo12g00371 Cma01g01950 . Car01g01524 Car12g00398 . Cpe06g00082 Cpe07g00377 Bhi04g00236 . . . Hepe10g0132 . . Cla08g01439 Cam08g1919 Cec08g1495 . Clacu08g1609 . Cre08g1395 Cone4ag1953 Cone7ag1865 Cone17ag1387 Cone20ag0094 Lsi04g01720 Csa03g04255 Chy04g00439 Cme03g01898 Blo17g00752 Blo18g00784 Bda08g01231 Bda01g01525 Bpe02g01722 Bpe05g00132 Bma01g00734 Bma05g00156 Sed01g2507 Cmo01g02011 Cmo09g00120 Cma12g00422 Cma05g00291 Car05g00240 Car09g00108 Cpe11g00240 Cpe02g00089 Bhi09g02119 Tan01g4988 Cmetu04g2374 . Hepe01g1639 Mch11g0141 . Cla05g01895 Cam05g2031 Cec05g2040 Cco05g2096 Clacu05g2022 Cmu05g1902 Cre05g2026 Lsi08g01340 Csa02g02116 Chy03g01400 Cme04g00495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000551 5 3 4 6 4 4 4 4 4 3 2 3 4 3 5 4 4 4 4 4 3 3 5 3 2 3 3 5 3 1 109
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00398 Car_Chr12 FPKM 21.191212 21.823376 18.744057 18.543522 23.282761 21.189209 25.749533 31.374107 32.099598 32.222118