Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00399 ATGTCAGACAGATCTATAGAGGTGGCCAGCAAAATCAGTATTCTCTGTCAAGCTGGTCTAGGACAATGCCAAGGGGTTGATGGAGACCGAGAAGAAATTCAATGCGGTGTAAATAATTATGATAATGCTGACATCAAACCATGCATACCAAACGTAGTTGCTGATGAAGACGGGAAAAACTTTAGTCATATTCAATTTGGGGACAATTTCCAGTCGCTGGAAAGGAAGGTCTCCTGTGAAACGAAGAATGGACTAAAACATTGCTCATGTGGCGATACGATGGGGCTAGGTAAAAGTCATCTTAATGAAAATATGCACAATTCTTGTCATGCTCTAGAACAGGCAAATAAAAACAATGGCCTTTGTGGGGGTGTTTCCAATGGAGATTTTTGTGACGTGGTGGCCCATGAGTCCACAGTCGATTTGTCTAAAACTTCAGGTGTAGATTGCGAAGGAAAAGACAGATCACTGGCTATACATTATGATGAATTGCCTAACTCCGCCAATGTTTGTGAAAGTTATTCCGAAGGATTCTGTAAATCTACTAAAAAATTAAAGATTTCTAATCCTTCTTCCGAAGGAACTCCACTCTCCAATCTTGAATTGTTGGCAGCCTTCGAGTCGATGAAAGCGGATAAAACATGCTGTGACTCTGGTAATTTAGATACTGGTACTGACGAGCCAAATACTAAAGTTGGTTCTGTGCAGAATGAAAATGCTCTGATCTCTCATAGGATTTCAGATTCAACTGCTGTCTGCCCTGTTGGGAATTGCAGTATGATATCAGATAGTCAACCAGCCAAGGCTTCTGTAGAGGTAGATGGTTCGAATAATAATATACCTGCTGATAAAGAGGTCAAGGTATCTTCTCCTGGGTCTCTGACTCCAGATGATAATGACATTGAGGATGTAATATCTGCTCCTGGAAGTGAAAAAGATTTAAAGCTTTCAGCTTTGCAACGTGTTGTGCGCAAGACAAAGAAGCCTAGACGTGATGACATGGCTTATGAAGGAGATATTGATTGGGAGGTTTTGCTTAATGAGCGTGCAGTTGATAGTGACTATTCTTTTAGATCAAGAAGGGATTCTACTTCAACAACTTTTACGGAGGCGGAAACTGGGGGTAGAGCTGCTGTGTCTGCAGGGCTTAAGGCTCATGCAGTTAGCCTACTTGAGAAGATTAAATTTAAGGAAGTGCTTAAGAGAAAAGGTGGGCTTCAAGAGTACTTAGCGTGCAGGAATCAGATCCTGGGCCTTTGGTGTAAAGATGTTACTCGCATTTTACATCTCGTTGACTGTGGGATCACTGAAACTCCCTCTATGGATGAACCAACGCATTTTTCCCTTATTAGGGAGATCTACGCGTTTCTTAATCTTCGTGGTTATATAAATGCGGGAATTGCTTCTGAAAAAGCCAAATCAGAATGTGGCTTCAAGCATGACTGTGAACGGGGAGAAAAGAAAGTTGGAGACATTAGTGTTGCTTCAGCTGCTGATTCTGAGGAAGGCATTTCTGCCATGGTTAAAAATTCTGATGCTTCTAATGCCAAGAACAGTGTTTCAGCTGGCTGTGAACTACCAGAAGACACTGAAGGAAGAGACCTTGTGACTGCAAATAATCTGGAGTTGCAAAAATTTGCAGAACACGAACAAGAATTGGTACATGACTTGGAGTATGGTACTCATGATCCTTCACCGGGAAAATTGGTAGGTATTGATGTTCCAGGTGAAGCTGTCGCCCATTTAGCTCATCATTCAAGTAATGGTTGGCACCCAATTGGCTCCTCTAATGAGTGTGTAGGGGGTGATGAACAACAGCAGAGTAATTCAGAAGTCAGAAAAAAGGTAATTGTTATTGGAGCTGGCCCTGCTGGCTTGACTGCTGCCAAGCACTTGCATCGTCAGGGCTTTACTGTCAACGTACTTGAAGCCAGGAATAGATTAGGAGGTCGTGTTTATACAGATCGCTCCTCTCTTTCGGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTTGCAACTGAAAGAAGACCTGATCCTTCTTCATTGATTTGCACTCAATTGGGCCTTGAGTTGACTGTGTTAAATAGTGACTGTCCTCTCTATGATATCGTTACATGCAAAAAAGTTCCGGTAGACATTGATGAAGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAGAGGGGAGCATGCAATGACCATGTCTCTTGAGGAGGGTCTAGAATATGCCCTTAAGCGACGACGCATGGCTCGATTGGGAATGGATGTTCGTTCTGAGGAAGAAGTTTTGAGTCCCTTTGAGAGGCGAGTTATGAACTGGCATTTGGCTAACTTGGAGTATGGTTGTGCTGCTATGCTGAAGAAAGTATCGCTTCCTCATTGGAACCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATCAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTCAATATTCACCTAAACCATGTTGTGGCTGATATTTCTTACAGCACCGCTGATATTGGGTCGAATGTAAATCAATGTGCGAAGGTAAAAGTTTCCACAACCAATGGATGTGAGTTTCTAGGAGATGCTGTCCTTATTACTGTGCCTCTTGGGTGTTTGAAAGCAGAATCTATTAAGTTTTCCCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGTTTTGGAGTTCTTAACAAAATTATTCTTGAATTTCCAGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCCGTTCTCATTGCGCTAGTGGTTGGTCAGGCGGCTGTGGAGAGGCAATACATGAGCTCTTCCGATAACATAAGCCATGCATTAATGGTTCTTCGCAAACTTTTTGGAGAAGCTGTGGTGCCTGACCCAGTTGCATCTGTGGTAACGGATTGGGGAAGAGATCCGTTTAGTTATGGTGCTTACTCCTATGTTGCTGTTGGAGCGTCTGGAGAGGACTATGACATTTTAGCCAGGCCTGTTGAAAACTGTTTGTTTTTTGCTGGTGAAGCTACATGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGTCTAAGAGAGGCTGTACGCATGATTGATGTATTGAGCACTGGTTATGATTATACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAGAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACGTAATTACACGACTCGATGATGTTAAGATTTCTGATGCTCTCTACAAAAATTCTATGGATTGTGCCAAAGAAGCCTTACTTCAAGACTTGTTTTCTAGTGCGAAAACGACTGCAGGGAGATTGCATGTCGCAAAAGAGTTGTTGAAACTCCCTGTTGAGACATTGAAGTCCTTCGCAGGGACCAAAGAAGGTCTTACAGTTCTCAACTCATGGATTCTGGACTCAATGGGGAAGGATGGGACTCAACTTCTTCGGCAGTGTGTTCGTATTCTTGTTCTAGTTTCAACTGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATTCGCGCCATTGCGAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAAGCTGCTCATGGGGGGTTAAAACTCTCAAAGTCGGTTTCTACTGTAGAATCATTGAAGAGGAAATCTAATAAAGATTCTTCTGGGAGACCTCCTTTGCATGCAAACAACAGCACACTGGATAGTAGAGGCAATTTGCAGACTTCTACAATTCACTTGCCTTCTGATGTCAATACGAAAAATGATAATAGCAAACAATTGAAATTAGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTAGGAAAGCAGGATGCAGAAATGGAAGACAACAACATTGCTATGACAGAAGAAGAGGAGGCTGCCTTTGCTGTTGCTGAGGCAGCACGTGCAGCAGCACTTGCAGCTGCGAAGACTGACTTGGTGATTTTCACACCGCAGGCGTATGCATCTTCTGAAGCTAAGTGTGCATTGCAGCTCCCTAAAATCCCTTCCTTTCACAAATTTGCTCGAAAGGAGCATTGCGCACAAATGGATGAGTGTGAGTCTAAAAGGAAGTTGTCTGGCAGTGTGCTAGGAAGACAGGATTGTATATCAGAAATAGATTCAAGGAATTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTCGAAAGTTCACGAATGTCTGCAGATAACCTTTCGCAAAGGAGCCATTCAAATGAGATTGTTAGCCAATTAAACTTCAGGGAGCACTCCGGTGAAAGTGCCCCTGTGGATAGCAGTATATACACGAAAGCATGGGTTGATACAGCTGGCAGTGTTGGAATGAAAGATTATCATGCAATTGAGAGATGGCGGTCTCAAGCAGCTGCAGCTCATGTAAACGACGAGGAGGATTCAAACACTGCTGGGAATAAACCCACTTGGAATAGTGATCAATTAGCGAATGAAAGCTCGATATCACAAGTGACGATCAACAAGGAGCCTTTAAGAAACCATCATCGTGGGGCTGACAGAATTAAGCAGGCCGTAGTTGATTATGTTGCATCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATACAAGACAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCTACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGTGCGCCTTAATTTCTGAAGCTGCAATTGAGAAGTATGACATTTCTGCTTGTCCGGATGAGATCTATCTGCTTATGCGACTTGGAGAAAAAACAAATGCAATGTTCGGACCGACACGACTATTATAG 5031 43.01 MSDRSIEVASKISILCQAGLGQCQGVDGDREEIQCGVNNYDNADIKPCIPNVVADEDGKNFSHIQFGDNFQSLERKVSCETKNGLKHCSCGDTMGLGKSHLNENMHNSCHALEQANKNNGLCGGVSNGDFCDVVAHESTVDLSKTSGVDCEGKDRSLAIHYDELPNSANVCESYSEGFCKSTKKLKISNPSSEGTPLSNLELLAAFESMKADKTCCDSGNLDTGTDEPNTKVGSVQNENALISHRISDSTAVCPVGNCSMISDSQPAKASVEVDGSNNNIPADKEVKVSSPGSLTPDDNDIEDVISAPGSEKDLKLSALQRVVRKTKKPRRDDMAYEGDIDWEVLLNERAVDSDYSFRSRRDSTSTTFTEAETGGRAAVSAGLKAHAVSLLEKIKFKEVLKRKGGLQEYLACRNQILGLWCKDVTRILHLVDCGITETPSMDEPTHFSLIREIYAFLNLRGYINAGIASEKAKSECGFKHDCERGEKKVGDISVASAADSEEGISAMVKNSDASNAKNSVSAGCELPEDTEGRDLVTANNLELQKFAEHEQELVHDLEYGTHDPSPGKLVGIDVPGEAVAHLAHHSSNGWHPIGSSNECVGGDEQQQSNSEVRKKVIVIGAGPAGLTAAKHLHRQGFTVNVLEARNRLGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICTQLGLELTVLNSDCPLYDIVTCKKVPVDIDEALEAEYNSLLDDMVLLVAQRGEHAMTMSLEEGLEYALKRRRMARLGMDVRSEEEVLSPFERRVMNWHLANLEYGCAAMLKKVSLPHWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLNIHLNHVVADISYSTADIGSNVNQCAKVKVSTTNGCEFLGDAVLITVPLGCLKAESIKFSPPLPEWKRLSIQRLGFGVLNKIILEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQYMSSSDNISHALMVLRKLFGEAVVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDVLSTGYDYTAEVEAMEAAQRQSECENDEVGDVITRLDDVKISDALYKNSMDCAKEALLQDLFSSAKTTAGRLHVAKELLKLPVETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAAHGGLKLSKSVSTVESLKRKSNKDSSGRPPLHANNSTLDSRGNLQTSTIHLPSDVNTKNDNSKQLKLEMENSSKSDISSSRSRGSLGKQDAEMEDNNIAMTEEEEAAFAVAEAARAAALAAAKTDLVIFTPQAYASSEAKCALQLPKIPSFHKFARKEHCAQMDECESKRKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRSQAAAAHVNDEEDSNTAGNKPTWNSDQLANESSISQVTINKEPLRNHHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKTIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKCALISEAAIEKYDISACPDEIYLLMRLGEKTNAMFGPTRLL 1676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2546595 2555295 + Carg04007-RA Car12g00399 158015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00399 1676 MobiDBLite consensus disorder prediction 1321 1336 - -
Car12g00399 1676 MobiDBLite consensus disorder prediction 270 299 - -
Car12g00399 1676 MobiDBLite consensus disorder prediction 1524 1550 - -
Car12g00399 1676 MobiDBLite consensus disorder prediction 1266 1341 - -
Car12g00399 1676 ProSiteProfiles SWIRM domain profile. 374 474 IPR007526 GO:0005515
Car12g00399 1676 MobiDBLite consensus disorder prediction 1277 1310 - -
Car12g00399 1676 Pfam Flavin containing amine oxidoreductase 624 1076 IPR002937 GO:0016491
Car12g00399 1676 MobiDBLite consensus disorder prediction 1535 1550 - -
Car12g00399 1676 Pfam SWIRM domain 384 464 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00399 - - - bhj:120075972 2634.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00239 Car12g00399 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00636 Car-Chr9:3696692 Car12g00399 Car-Chr12:2546595 3.59E-69 dispersed
Car09g00808 Car-Chr9:4891079 Car12g00399 Car-Chr12:2546595 1.04E-93 dispersed
Car12g00399 Car-Chr12:2546595 Car15g00466 Car-Chr15:2486101 2.50E-90 dispersed
Car12g01262 Car-Chr12:11850359 Car12g00399 Car-Chr12:2546595 9.70E-14 transposed
Car12g00399 Car-Chr12:2546595 Car05g00239 Car-Chr5:1332799 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4402 PF01593 Amino_oxidase 4.70E-100 CL0063 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00399 Car_Chr12 FPKM 28.147139 30.090073 22.66226 21.451187 38.091198 35.945488 37.625935 13.243772 16.220428 14.274489