Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00400 ATGTCGTCAACCTTCAGCGGCGATGAAACGGCGCCCTTCTTCGGCTTCCTCGGCGCTGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTACGGAACGGCGAAGAGTGGGGTGGGAGTTGCGTCGATGGGAGTAATGAGGCCTGAGTTGGTTATGAAGTCGATTGTGCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGGCTTATTATTGCTGTGATTATCAGTACGGGGATTAACCCTAAGGCCAAATCTTATTACCTCTTCGATGGCTACGCGCATCTTTCCTCTGGGCTTGCTTGTGGCCTCGCTGGTCTGTCTGCTGGCATGGCTATTGGGATCGTCGGCGATGCTGGTGTTAGAGCCAATGCACAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTCTAATTTTCGCCGAAGCTCTGGCTCTCTATGGACTTATTGTTGGCATTATTCTCTCTTCCCGAGCTGGTCAGTCGAGAGCTGATTAA 498 51.81 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2556533 2558133 + Carg04008-RA Car12g00400 158016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00400 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Car12g00400 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Car12g00400 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00400 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00400 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00400 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00400 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Car12g00400 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Car12g00400 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Car12g00400 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Car12g00400 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Car12g00400 165 Gene3D - 11 162 IPR035921 -
Car12g00400 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Car12g00400 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00238 Car-Chr5:1328960 Car12g00400 Car-Chr12:2556533 5.61E-112 dispersed
Car05g00344 Car-Chr5:1977152 Car12g00400 Car-Chr12:2556533 1.10E-21 dispersed
Car09g00709 Car-Chr9:4216885 Car12g00400 Car-Chr12:2556533 9.27E-113 dispersed
Car12g00295 Car-Chr12:1945666 Car12g00400 Car-Chr12:2556533 1.37E-21 dispersed
Car12g00400 Car-Chr12:2556533 Car12g00401 Car-Chr12:2559833 2.09E-112 tandem
Car12g00400 Car-Chr12:2556533 Car05g00237 Car-Chr5:1324748 2.71E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00400 K02155 - pvy:116145974 288.885