Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00401 ATGTCGTCAGCCTTCAGCGGCGATGAAACGGCGCCCTTCTTTGGCTTTCTAGGCGCCGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCCGCTTATGGGACGGCAAAGAGCGGTGTTGGAGTTGCGTCGATGGGAGTGATGAGACCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACTGGGATTAACCCTAAGGCTAAATCTTATTACCTCTTCGATGGCTACGCGCATTTGTCCTCTGGTCTGGCTTGTGGTCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGGATCGTCGGCGATGCCGGCGTTAGGGCCAATGCACAACAGCCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCCGAAGCGCTTGCCCTTTATGGACTTATTGTCGGTATTATTCTCTCGTCCCGAGCTGGTCAGTCGAGAGCTGATTAA 498 51.41 MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2559833 2561802 + Carg04009-RA Car12g00401 158017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00401 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Car12g00401 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Car12g00401 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Car12g00401 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Car12g00401 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00401 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00401 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00401 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car12g00401 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Car12g00401 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Car12g00401 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Car12g00401 165 Gene3D - 11 162 IPR035921 -
Car12g00401 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Car12g00401 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00237 Car12g00401 CCT
Car05g00237 Car12g00401 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00400 Car-Chr12:2556533 Car12g00401 Car-Chr12:2559833 2.09E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00401 K02155 - csv:101209079 288.5