Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00406 ATGAAGATTCAGTGTGATGTCTGTGAAAAAGGCGATGCGTCAGTGTTCTGCACGGCGGATGAGGCGGCGCTTTGTAATCTCTGTGACCATCGTGTCCACCATGCGAATAAGCTCGCTTCGAAGCACCGCCGCTTCTCTCTGCTCCGCTCTGCTGCAGCGGAGGCACCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTTTGTCAACAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAACACGATAGGTTTCTTCTGACTGGGATTAAGCTTTCCACTACCGCTGCTCTGTACGCGCCGCCTCCCTCCGACGAGAAACCGATCAAAACTGGTCATCGTACTGGTTCTGATCACAAATCAAAGGGTTCAGTCAAGAAACCAACCGTTGTTCCTGCTGCTCCGGTAGGATGCACATCAAGTGTTTGCGTTAATGCCTCAACCAACATACCACCGGCAGTGCCCATGAACAAGGGCGGCGGAGGTCAGATTCCGACAGGAGGCGGTGGCTCAGCCAGTAGCATATCGGAATATTTGATGGAGACACTTCCTGGGTGGCACTTTGAGGATTTACTCGATTCCTCTGTTCCTCCCCCTTTTATGGAGTGTGAAGGGTTGGGATTACCATTTGAGGAAGGTGATTTCAACAGTGGCCTTTCACCATCGGAGCGTTTGGAGCTTTGGGTCCCTCAGGGGCCGATTTATGGTTCAGGATTGATGATGAACAGTGGGGTGAAGGACACAAAGGATTTGGTAGTAAACTCATCAAAAGTCAATAGAGCTTGGACAGATGATTGTTTCACTGTTCCTCAAATCACAAGTACAACAGCCCCATCTGCAGGCTTTAAGCGATCCAGATCTTTTTGGTATAACAATCACTAA 921 49.84 MKIQCDVCEKGDASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRSAAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSTTAALYAPPPSDEKPIKTGHRTGSDHKSKGSVKKPTVVPAAPVGCTSSVCVNASTNIPPAVPMNKGGGGQIPTGGGGSASSISEYLMETLPGWHFEDLLDSSVPPPFMECEGLGLPFEEGDFNSGLSPSERLELWVPQGPIYGSGLMMNSGVKDTKDLVVNSSKVNRAWTDDCFTVPQITSTTAPSAGFKRSRSFWYNNH 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2587799 2589216 - Carg04014-RA Car12g00406 158022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00406 306 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Car12g00406 306 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Car12g00406 306 MobiDBLite consensus disorder prediction 114 142 - -
Car12g00406 306 MobiDBLite consensus disorder prediction 120 138 - -
Car12g00406 306 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00406 - - - mcha:111013937 468.003
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01519 Car12g00406 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00406 Car-Chr12:2587799 Car16g00390 Car-Chr16:2396513 3.72E-37 dispersed
Car01g01519 Car-Chr1:12832885 Car12g00406 Car-Chr12:2587799 2.25E-27 wgd
Car12g00406 Car-Chr12:2587799 Car20g00702 Car-Chr20:4019655 5.89E-52 wgd
Car12g00406 Car-Chr12:2587799 Car03g00645 Car-Chr3:5830640 2.34E-20 wgd
Car12g00406 Car-Chr12:2587799 Car07g00389 Car-Chr7:1970360 1.60E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00282 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Car02g00898 . 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 8.8e-58 221.5
Car10g00391 CCT 58 412 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.8e-55 213.8
Car02g00898 . 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 2.1e-64 243.4
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.7 2.5e-92 336.3
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 7.1e-87 318.2
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 3.5e-86 315.8
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 4.6e-86 315.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car20g00702 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.2 8.7e-44 174.9
Car16g00643 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 3.9e-56 214.9
Car04g00690 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 6.7e-56 214.2
Car07g00389 CST 1 139 C2C2-CO-like Transcription Factor Family AT2G21320 66.9 2.3e-48 189.1
Car03g00645 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Car16g00643 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 7.6e-58 220.7
Car04g00690 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Car07g00389 CST 1 138 C2C2-CO-like Transcription Factor Family AT4G38960 71.8 2.4e-51 199.1
Car03g00645 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Car12g00406 CST 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.2e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4403 PF00643 zf-B_box 1.40E-05 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00406 Car_Chr12 FPKM 134.739655 146.666916 89.797211 87.48111 71.935951 75.246803 71.893295 1.654406 1.155509 1.318583