Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00406 ATGAAGATTCAGTGTGATGTCTGTGAAAAAGGCGATGCGTCAGTGTTCTGCACGGCGGATGAGGCGGCGCTTTGTAATCTCTGTGACCATCGTGTCCACCATGCGAATAAGCTCGCTTCGAAGCACCGCCGCTTCTCTCTGCTCCGCTCTGCTGCAGCGGAGGCACCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTTTGTCAACAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAACACGATAGGTTTCTTCTGACTGGGATTAAGCTTTCCACTACCGCTGCTCTGTACGCGCCGCCTCCCTCCGACGAGAAACCGATCAAAACTGGTCATCGTACTGGTTCTGATCACAAATCAAAGGGTTCAGTCAAGAAACCAACCGTTGTTCCTGCTGCTCCGGTAGGATGCACATCAAGTGTTTGCGTTAATGCCTCAACCAACATACCACCGGCAGTGCCCATGAACAAGGGCGGCGGAGGTCAGATTCCGACAGGAGGCGGTGGCTCAGCCAGTAGCATATCGGAATATTTGATGGAGACACTTCCTGGGTGGCACTTTGAGGATTTACTCGATTCCTCTGTTCCTCCCCCTTTTATGGAGTGTGAAGGGTTGGGATTACCATTTGAGGAAGGTGATTTCAACAGTGGCCTTTCACCATCGGAGCGTTTGGAGCTTTGGGTCCCTCAGGGGCCGATTTATGGTTCAGGATTGATGATGAACAGTGGGGTGAAGGACACAAAGGATTTGGTAGTAAACTCATCAAAAGTCAATAGAGCTTGGACAGATGATTGTTTCACTGTTCCTCAAATCACAAGTACAACAGCCCCATCTGCAGGCTTTAAGCGATCCAGATCTTTTTGGTATAACAATCACTAA 921 49.84 MKIQCDVCEKGDASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRSAAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSTTAALYAPPPSDEKPIKTGHRTGSDHKSKGSVKKPTVVPAAPVGCTSSVCVNASTNIPPAVPMNKGGGGQIPTGGGGSASSISEYLMETLPGWHFEDLLDSSVPPPFMECEGLGLPFEEGDFNSGLSPSERLELWVPQGPIYGSGLMMNSGVKDTKDLVVNSSKVNRAWTDDCFTVPQITSTTAPSAGFKRSRSFWYNNH 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2587799 2589216 - Carg04014-RA Car12g00406 158022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00406 306 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Car12g00406 306 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Car12g00406 306 MobiDBLite consensus disorder prediction 114 142 - -
Car12g00406 306 MobiDBLite consensus disorder prediction 120 138 - -
Car12g00406 306 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01519 Car12g00406 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00406 Car-Chr12:2587799 Car16g00390 Car-Chr16:2396513 3.72E-37 dispersed
Car01g01519 Car-Chr1:12832885 Car12g00406 Car-Chr12:2587799 2.25E-27 wgd
Car12g00406 Car-Chr12:2587799 Car20g00702 Car-Chr20:4019655 5.89E-52 wgd
Car12g00406 Car-Chr12:2587799 Car03g00645 Car-Chr3:5830640 2.34E-20 wgd
Car12g00406 Car-Chr12:2587799 Car07g00389 Car-Chr7:1970360 1.60E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4403 PF00643 zf-B_box 1.40E-05 No_clan Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00406 - - mcha:111013937 468.003