Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00407 ATGGCTGAATTGTTCTATGTAGGAGGAAGAGAAGAAGGCCCACCAAACAAAGAAGAACAACAACAACACAAACAAACACAACCCACCTTGTTTATGTACCGAAACGACCAACAAATCCACCACAAAGGCTTCGAAATATGGCCTCCACATTACCAAACCCACTTCTCCTCCGCCGTTGGTCAGAGCCGCCGCACCGACTCCGATCACCCCTCCAGATCCGCCTTCACCGCCACCAGACCCGCCGCAGCCACTGCCGGAGGCATCAATTGCCAAGACTGCGGCAACCAAGCCAAGAAGGATTGTGCTTATTTGCGGTGTAGGACTTGCTGTAAGAGCCGAGGGTTTCACTGCCAGACTCACGTGAAGAGCACGTGGGTTCCGGCGGCTAAACGCCGTGAGCGGCAGTTTCGCGGTGGGGATAATTCCAAACGACTTAGAGAAACCCAATCCGCCACCGCCACCGCCACCGCCACCCCTCGTTTGCCCTCCTCCTTCACCTCAGAATTGGAGAAATTTCCATCGGAAGTGAACTCACCGGCGGTGTTTCGGTGTGTGAAAGTAAGCGCGATGGACGATGAGGATGAAGAGTTTGCATATCAGACGGCTGTGAATATCGGAGGCCACGTGTTCAAAGGAATTCTCTACGATCAAGGCTCTGAAGTCCATTACACCGCCGGCGAGAGCTCCTCCGGCCACGGAGGAGATGGATCAGTACACCCACTTAACTTAATTGCTGGACCCTCCAACGCCGCCGCCGCTTCCACCACTACCTCGGCTGCAACCAGTAACAACCCCACCGCCACCGCCGCCGCCGTCGCGCCGTTACTTGACCCTTCTATATATCCAGCTCCTCTTAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCTAGATCATGA 903 54.71 MAELFYVGGREEGPPNKEEQQQHKQTQPTLFMYRNDQQIHHKGFEIWPPHYQTHFSSAVGQSRRTDSDHPSRSAFTATRPAAATAGGINCQDCGNQAKKDCAYLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQFRGGDNSKRLRETQSATATATATPRLPSSFTSELEKFPSEVNSPAVFRCVKVSAMDDEDEEFAYQTAVNIGGHVFKGILYDQGSEVHYTAGESSSGHGGDGSVHPLNLIAGPSNAAAASTTTSAATSNNPTATAAAVAPLLDPSIYPAPLNAFMAGTQFFPPSRS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2598434 2599429 + Carg04015-RA Car12g00407 158023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00407 300 MobiDBLite consensus disorder prediction 145 170 - -
Car12g00407 300 Pfam Domain of unknown function (DUF702) 87 220 - -
Car12g00407 300 MobiDBLite consensus disorder prediction 134 170 - -
Car12g00407 300 MobiDBLite consensus disorder prediction 1 26 - -
Car12g00407 300 MobiDBLite consensus disorder prediction 57 79 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00232 Car12g00407 CCT
Car05g00232 Car12g00407 ECH
Car01g01515 Car12g00407 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00407 Car-Chr12:2598434 Car19g00232 Car-Chr19:2337957 6.64E-79 dispersed
Car01g01515 Car-Chr1:12816384 Car12g00407 Car-Chr12:2598434 4.87E-71 wgd
Car12g00407 Car-Chr12:2598434 Car03g00648 Car-Chr3:5844979 9.79E-38 wgd
Car12g00407 Car-Chr12:2598434 Car05g00232 Car-Chr5:1231740 3.92E-126 wgd
Car12g00407 Car-Chr12:2598434 Car07g00399 Car-Chr7:2030316 5.96E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4404 PF05142 DUF702 1.70E-56 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00407 - - cmos:111454480 546.584