Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00408 ATGGATCTACTGCGGTCGGAGCCGATGCAATTTGTGCAGCTGATCATTCCTAATGAATCGGTGCACCGGACGGTTTCCTATCTCGGCGACCTCGGTCTCTTCCAATTCAACGATCTCAATGCATCTAGAAGTCCATTCCAGCGAACGTATGCTGCTCAGATTAAAAGATGTGGGGAAATGGCTCGCAAGCTACGGTTTTTCAGGGAGCAAATGGCAAGGGCTGGTTTATCACCGTCATCAAATTCTCTAGCGGTTGCTGATTTTGATCTGGATAATTTGGAGGTTAAACTTGGAGAATTTGAGGCAGAATTGTTAGAGATAAATGGCAACAATGAGAAGTTACGACGCAATTACAGTGAGCTATTGGAATATAAGCTTGTACTTCAGAAGGTTGGGGAGTTTTTCCATCTAGCTCAAAGCATAGCTGCAGCTCAGCAAAGAGAACTGGAAGTGCAACAAAACGGGGAAGGGTCCATCGACAGTCCTTTACTATTGGAACAAGAAATGACAACGGATTCAACGAAACAAGTTAAGCTAGGTTATATCAGTGGTCTAGTTCTGAGAGAAAAGTCAATGGCTTTTGAAAGGATTTTGTTCCGTTCAACTAGGGGCAATGTGTATCTAAGGCAAGCTGTGGTTGATGGTTCCGTCACTGATCCTGTATCTGGGGAGAAGGTCGAGAAAAATGTGTTTGTCATATTTTATTCCGGAGAGAGAGCAAAGAATAAAATTCTGAAAATAAGCGAAGCTTTTGGCGCAAACCGTTATCCGTTCACTGATGACTTGGGCAAACAACTTCAAATGATTACAGAGGTGTCTGGAAAACTCTCTGAATTGAAGACTACCATTGATTTGGGGCAAGTGCACCGAAGTAAACTCTTGCAGATGATTGGCCATCAATATGAGCAGTGGAATCTTTTGGTAAAGAAGGAAAAGTCAGTTTACCACACTTTGAATATGCTCAGTGTTGACGTAACAAAGAAATGCCTTGTAGGTGAAGGTTGGTGTCCTGTTTTTGCAACAAATCAGATTCAAAATGTGATCCAGAAGGCTACCTTCGACAGCAAATCACAGATTGAGGCTATCTTTCATGTTCTGCAAACGAAGGAAGCACCACCAACATATTTCCGCACAAACAAATTTACTTCTACATTTCAAGAAATTGTGGATGCATATGGGATTGCTAAGTATCAGGAAGCAAATCCTGGGGTCTACACGATTGTCACCTTTCCGTTCCTTTTTGCTGTAATGTTCGGAGATTGGGGCCATGGAATATGCTTGTTGCTGGCAACATTATATCTTATAATAAGGGAGAAGAAATTTTCCAGCCAGAAACTTGGAGATATCGTGGAAATGACTTTTGCGGGCCGTTATGTTATCATGATGATGGCACTTTTTTCAATCTACACAGGACTGATTTATAATGAGTTTTTTTCTGTCCCATTTGAATTGTTTGGGCCTTCTGCATATGGTTGTCGTCATACTTCATGCAGGGATGCCACTACCATAGGTTTAATAAAGGTTCGTGATACATATCCATTTGGTGTGGATCCTAAGTGGCATGGCACTCGAAGTGAATTACCTTTTCTCAACTCGTTGAAGATGAAGATGTACCAATTTGTTCCGCAGATGATATTCTTGAACAGCTTATTCGGCTACCTCTCGCTTCTCATAATTGTAAAATGGTGCTCTGGATCTCAAGCCGATCTGTACCACGTAATGATATACATGTTCTTGAGTCCTACAGATGATCTAGGTGAAAATGAGCTTTTTCCAGGGCAGCAGTTTGTTCAGGTTCTTTTACTTTTGGCTGCCCTCACTGCCGTGCCATGGATGTTGCTTCCGAAGCCTTTTCTGTTGAGGAAACAGAATGCAGAACACCACAGTTCCCCCAGCCACGATGACTTTGACTTCAGCGAGGTCTTTGTACACCAACTTATACATACCATAGAGTTCGTACTTGGTGCAGTTTCTAACACAGCATCTTATCTACGTCTATGGGCCCTCAGGTTCGACAGTTGGAGCATCCGAATAATAGGAATAGCAGTTTTTATATGTGCAACTGTGGGAGTTTTACTAGTGATGGAAACTCTGAGCGCATTCCTACACGCCTTGAGGCTCCACTGGGTGGAGTTTCAGAACAAATTCTATGCAGGAGATGGATTCAAATTTTCCCCTTACTCCTTTTCTCTGCTTCGGGAGGAGGATGAGTGA 2214 42.64 MDLLRSEPMQFVQLIIPNESVHRTVSYLGDLGLFQFNDLNASRSPFQRTYAAQIKRCGEMARKLRFFREQMARAGLSPSSNSLAVADFDLDNLEVKLGEFEAELLEINGNNEKLRRNYSELLEYKLVLQKVGEFFHLAQSIAAAQQRELEVQQNGEGSIDSPLLLEQEMTTDSTKQVKLGYISGLVLREKSMAFERILFRSTRGNVYLRQAVVDGSVTDPVSGEKVEKNVFVIFYSGERAKNKILKISEAFGANRYPFTDDLGKQLQMITEVSGKLSELKTTIDLGQVHRSKLLQMIGHQYEQWNLLVKKEKSVYHTLNMLSVDVTKKCLVGEGWCPVFATNQIQNVIQKATFDSKSQIEAIFHVLQTKEAPPTYFRTNKFTSTFQEIVDAYGIAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYLIIREKKFSSQKLGDIVEMTFAGRYVIMMMALFSIYTGLIYNEFFSVPFELFGPSAYGCRHTSCRDATTIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMYQFVPQMIFLNSLFGYLSLLIIVKWCSGSQADLYHVMIYMFLSPTDDLGENELFPGQQFVQVLLLLAALTAVPWMLLPKPFLLRKQNAEHHSSPSHDDFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALRFDSWSIRIIGIAVFICATVGVLLVMETLSAFLHALRLHWVEFQNKFYAGDGFKFSPYSFSLLREEDE 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2605249 2614958 + Carg04016-RA Car12g00408 158024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00408 737 Coils Coil 90 117 - -
Car12g00408 737 Pfam V-type ATPase 116kDa subunit family 623 669 IPR002490 GO:0033179|GO:0046961|GO:1902600
Car12g00408 737 Pfam V-type ATPase 116kDa subunit family 676 729 IPR002490 GO:0033179|GO:0046961|GO:1902600
Car12g00408 737 Pfam V-type ATPase 116kDa subunit family 27 537 IPR002490 GO:0033179|GO:0046961|GO:1902600
Car12g00408 737 Pfam V-type ATPase 116kDa subunit family 538 630 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00230 Car12g00408 CCT
Car05g00230 Car12g00408 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00918 Car-Chr11:5815382 Car12g00408 Car-Chr12:2605249 0 dispersed
Car12g00408 Car-Chr12:2605249 Car20g00400 Car-Chr20:2255944 0 dispersed
Car05g00230 Car-Chr5:1217410 Car12g00408 Car-Chr12:2605249 7.15E-26 transposed
Car05g00231 Car-Chr5:1219756 Car12g00408 Car-Chr12:2605249 4.54E-28 transposed
Car12g00408 Car-Chr12:2605249 Car19g00527 Car-Chr19:6865119 0 wgd
Car12g00408 Car-Chr12:2605249 Car05g00229 Car-Chr5:1216470 4.40E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00408 K02154 - csv:101209817 1280.77