Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00409 ATGTTTTTGCAGTGTGATCCTGAGGAAGCTGGTGCATGCGACGCGGGGTGCAACGGGGGGCTAATGAACTCAGCTTTCGAGTACATTTTGAAAGCTGGTGGATTAGAGAGAGAGGAGGACTATCCTTACACTGGGAAGGATCGTGGCCCTTGCAAATTCCAAAATGCCAAAATCGCAGCCTCTGTTTCCAACTTCAGTGTCATTTCTCTTGATGCCGACCAAATTGCAGCAAACTTGCTCAAGAATGGTCCTCTAGCAATTGGAATCAATGCGGCTTTCATGCAGACATACATGAAGGGAGTTTCGTGCCCATACATATGCTCTAAACGAAACCTAAATCATGGAGTACTGCTTGTAGGGTATGGATCTGCAGGCTATGCTCCGATACGGTTCAAGGAGAAGCCCTACTGGATCATAAAGAATTCTTGGGGAGAAAACTGGGGAGAAAATGGGTACTACTTAATCTGCAAGGGCAAAAATATCTGTGGAGTTGAGTCGATGGTCTCGTCCGTGGCTGCTGCTACCCAAAACTGA 534 47.0 MFLQCDPEEAGACDAGCNGGLMNSAFEYILKAGGLEREEDYPYTGKDRGPCKFQNAKIAASVSNFSVISLDADQIAANLLKNGPLAIGINAAFMQTYMKGVSCPYICSKRNLNHGVLLVGYGSAGYAPIRFKEKPYWIIKNSWGENWGENGYYLICKGKNICGVESMVSSVAAATQN 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2616628 2617314 - Carg04017-RA Car12g00409 158025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00409 177 Pfam Papain family cysteine protease 3 170 IPR000668 GO:0006508|GO:0008234
Car12g00409 177 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 136 155 IPR025661 -
Car12g00409 177 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 112 122 IPR025660 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00409 K01373 CTSF; cathepsin F [EC:3.4.22.41] - csv:101210316 328.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00409 Car-Chr12:2616628 Car10g00688 Car-Chr10:3566241 9.23E-31 dispersed
Car12g00409 Car-Chr12:2616628 Car19g00526 Car-Chr19:6862225 6.83E-36 wgd
Car12g00409 Car-Chr12:2616628 Car02g00238 Car-Chr2:1614676 1.50E-100 wgd
Car12g00409 Car-Chr12:2616628 Car20g00705 Car-Chr20:4052711 9.02E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025075 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00409 Car_Chr12 FPKM 20.076399 21.298645 33.919006 33.649849 3.089488 2.700754 3.839432 2.21815 2.745688 1.905163