Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00413 ATGGGTATTAGCATGTTTCGTGCTGGATTTTCTGTTCTTGTAATTTTGGGTTTTGTAGTGTGCGATTTGGGCGTTTGTAATGGCGGATTCACGAGCGGTTACGTTAGGAATGACTATGTGGCGTCGGATATGCCGCTCGATAGCGACGTGTTCAAGCCTCCTCCTGGTAGAAATGCCGCACAACAGGTTCATATAACACAAGGGGATCTTGAGGGAAAGAGTGTAATTATCTCATGGGTTACACCGGAGAAACCTGGTTCAAACAGAGTGGTTTATTGGGCTGAAAACAGTCCGATTAGAAACAAAGCTGAAGGCTCTGTTGTTTCCTATAAGTACTTCAACTATACATCTGGTTTCATTCATCACTGCACTATTGAGAATTTAGAGTACGACACGAAATACTTCTATGTGATCGGGTTCGGAAGTCTAACACGAAGGTTTTGGTTTGTTACCCCTCCTAAAATTGGCCCTGATGTGCCTTATACTTTTGGTGTTATAGGAGATCTTGGCCAAACATATGATTCCAATAAAACACTTACACATTATGAATCAAACCCAACAAAAGGACAGGCTATGTTGTTCGTCGGGGACCTGTCGTATGCAGACCGTTATCCCTTCCATGACAACACCAGGTGGGACACATGGGGGAGGTTCGTAGAAAGAAGTGCAGCATATCAACCTTGGATTTGGACTGCAGGGAATCATGAACTCGACTATGCTCCTGAAATTGGTGAAACCGAACCGTTTAAGCCTTTTTTGCATCGCTACCGTGTCCCGTATAATGCATTGGATGGCTCGTCTCCGCTTTGGTACTCCATTAAGAGAGCTTCTGCTCATATAATTGTCTTGTCCTCTTACTCATCTTATGTGAAAAGCAGCCCCCAATACAAATGGCTGCAGAGTGAGCTGCTAAGGGTAAACAGGGACCAGACTCCGTGGCTCATAGTTCTTATGCATACTCCAATGTACAGCAGTTATGTTCACCATTACATGGAGGGAGAAAGCATGAGAGTGGTCTTCGAGCCATGGTTCGTGAACTATAAAGTTGATGTTGTCTTCGCGGGTCACGTTCATGCCTACGAACGATCTGAACGAGTATCAAATATAGCATACAACATTGTAAATGGGTTATGTTCCCCAGTGCGTAACCAAGATGCTCCAGTTTACATAACCATTGGAGATGGAGGAAACTCAGAAGGATTAGTAACAGAGATGACAGAACCACAGCCAAGATACTCAGCTTACCGTGAAGCCAGCTTCGGCCATGCCACACTGGACATAAAGAACAGAACTCACGCCTACTTCGCTTGGCATCGCAACCAAGATGAATATTCTGTGGAAGCTGATGCCCTATGGCTGCACAATCGTCAATGGATAGCTTCAAAATTGGCAAGATCTGCTCCGGTGAGTCACCTTTCATCAGCTGCCTGA 1431 44.93 MGISMFRAGFSVLVILGFVVCDLGVCNGGFTSGYVRNDYVASDMPLDSDVFKPPPGRNAAQQVHITQGDLEGKSVIISWVTPEKPGSNRVVYWAENSPIRNKAEGSVVSYKYFNYTSGFIHHCTIENLEYDTKYFYVIGFGSLTRRFWFVTPPKIGPDVPYTFGVIGDLGQTYDSNKTLTHYESNPTKGQAMLFVGDLSYADRYPFHDNTRWDTWGRFVERSAAYQPWIWTAGNHELDYAPEIGETEPFKPFLHRYRVPYNALDGSSPLWYSIKRASAHIIVLSSYSSYVKSSPQYKWLQSELLRVNRDQTPWLIVLMHTPMYSSYVHHYMEGESMRVVFEPWFVNYKVDVVFAGHVHAYERSERVSNIAYNIVNGLCSPVRNQDAPVYITIGDGGNSEGLVTEMTEPQPRYSAYREASFGHATLDIKNRTHAYFAWHRNQDEYSVEADALWLHNRQWIASKLARSAPVSHLSSAA 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2636970 2641078 + Carg04021-RA Car12g00413 158029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00413 476 Pfam Iron/zinc purple acid phosphatase-like protein C 386 446 IPR025733 -
Car12g00413 476 Pfam Calcineurin-like phosphoesterase 162 360 IPR004843 GO:0016787
Car12g00413 476 Pfam Purple acid Phosphatase, N-terminal domain 61 151 IPR015914 GO:0003993|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00413 K22390 ACP7; acid phosphatase type 7 - csv:101210805 873.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00413 Car-Chr12:2636970 Car07g00845 Car-Chr7:4473618 1.43E-87 dispersed
Car11g00920 Car-Chr11:5833086 Car12g00413 Car-Chr12:2636970 0 transposed
Car12g00413 Car-Chr12:2636970 Car03g00651 Car-Chr3:5857690 0 wgd
Car12g00413 Car-Chr12:2636970 Car07g00401 Car-Chr7:2039991 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1025 . . . . . . . . . Cmo12g00387 . . . Car12g00413 . . Cpe07g00391 . . . . . . . . . . . . . . . . Cone17ag1369 . . . . Cme03g01915 . . . . . . . . . . . Cma12g00436 . . . . . . . . . . . . . . . . . . . . Csa02g02096 Chy03g01418 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00413 Car_Chr12 FPKM 3.166667 3.511928 1.78869 1.757967 12.090244 10.030732 12.859199 0.0 0.0 0.0