Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00414 ATGGCCAATCTCAGCTTCCATTTTGTGATTACCTTTCTCTTTCTTCTTCGCCATTTTTCTGCTACTTCGGATATTTCGGAGCTCTTCGAAATCTGGTGCACAGAACATGGAAAATCGTATTCCTCCGCGGAAGAAAAGCTATACAGACTCGGTGTTTTTGCCGATAACTATGAATTTGTTACTCATCACAATAATCAGGGAAATTCTTCTTATACTCTTTCTCTCAATGCTTATGCCGATATTACTCACCATGAGTTCAAGGCCGCTCGCTTAGGTCTTTCCTCTGCTTTGCGGAGCTCGCGGCCGGTTTCGCCGCAAGAACCCTATCTTCATCGGGATGTTCCTGAATCGTTAGATTGGAGGAAGAAAGGGGCTGTGACTGCTGTTAAGGATCAAGGAAGTTGTGGTGCTTGCTGGTCTTTCTCAGCAACAGGAGCTATTGAAGGGATTAACCAGATTAGAACAGGGTCTCTTATCAGTGTTTCTGAACAGGAATTAATTGATTGTGACAGATCGTATAATTCTGGCTGTGGAGGAGGACTGATGGATTATGCATACCAATTTGTGATAAAAAACCATGGGATCGACACCGAAGATGATTATCCCTTTCAAGGTCGTGATGGATCGTGTCTAGCAATTCAACCTGTGAGTGTTGGTATCTGTGGCAGTGAGAGAGCTTTTCAATTATATTCAAAGGGAATTTTCTCTGGTCCATGTTCAACTTCCTTGGATCATGCTGTGTTGATTGTAGGATATGGATCAGAAAATGGTGTTGATTATTGGATTGTGAAGAACTCGTGGGGTAAACGTTGGGGAATGGATGGTTATATTCATATGCAGCGCAACAGCGGAAATTCTGAAGGCGTTTGCGGAATCAACATGCTTGCTTCATATCCAACTAAAACGAGTCCCAACCCACCTCCCTCCCCTCCGCCAGGTCCAACAAAATGCAGTTTTCTTACTAGCTGTGCTGCTGGGGAGACCTGTTGTTGTGCGAAGGAATTTTTTGGCCTTTGCTTGTCTTGGAAATGCTGTGGACTGAGCTCTGCTGTCTGTTGCAAGGACGGTCGTCATTGTTGCCCCTTTGATTATCCCATTTGTGATACTCAGAGGAACCTATGCCTCAAGAGAACGATGAACGGTACAAGAACAGAAGCACTCGAGAATCGGAGTCCTTCGGGTACATCCGGTTCGTGGAGCTCTTCCTAA 1209 44.83 MANLSFHFVITFLFLLRHFSATSDISELFEIWCTEHGKSYSSAEEKLYRLGVFADNYEFVTHHNNQGNSSYTLSLNAYADITHHEFKAARLGLSSALRSSRPVSPQEPYLHRDVPESLDWRKKGAVTAVKDQGSCGACWSFSATGAIEGINQIRTGSLISVSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEDDYPFQGRDGSCLAIQPVSVGICGSERAFQLYSKGIFSGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGKRWGMDGYIHMQRNSGNSEGVCGINMLASYPTKTSPNPPPSPPPGPTKCSFLTSCAAGETCCCAKEFFGLCLSWKCCGLSSAVCCKDGRHCCPFDYPICDTQRNLCLKRTMNGTRTEALENRSPSGTSGSWSSS 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2643948 2648608 + Carg04022-RA Car12g00414 158030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00414 402 Pfam Papain family cysteine protease 114 211 IPR000668 GO:0006508|GO:0008234
Car12g00414 402 Pfam Papain family cysteine protease 213 299 IPR000668 GO:0006508|GO:0008234
Car12g00414 402 Pfam Granulin 328 375 IPR000118 -
Car12g00414 402 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
Car12g00414 402 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 260 279 IPR025661 -
Car12g00414 402 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 243 253 IPR025660 -
Car12g00414 402 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 132 143 IPR000169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00414 - - - csv:101211052 700.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00214 Car-Chr9:1061901 Car12g00414 Car-Chr12:2643948 1.83E-120 dispersed
Car12g00414 Car-Chr12:2643948 Car10g00688 Car-Chr10:3566241 1.91E-62 dispersed
Car12g00414 Car-Chr12:2643948 Car11g01109 Car-Chr11:8810869 2.55E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00414 Car_Chr12 FPKM 2.605031 2.052317 0.803709 0.981246 0.465839 0.0 0.205478 0.0 0.0 0.0