Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00416 ATGGCTGAAGAAGGGCAAGTGATCGCATGCCATAAGAAAGCTGAGTGGGATGCTCATTTAGCGAAAGCGAAGGAATCTGGAAAACTGATTTCAATTGATTTCGATCGGATTTTGGATTTACTGGATATTATGTGTATTGAAGCATTTCACATTGTTGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTACAATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATCCCGGTGTCGTTTTCCTGAAAGTGGACGTCGATGAATTGAACACTGTTGCTACCGAGTGGGAGATCAATGCAATGCCGACATTTGTTTTCATGAAACGAGGGGAAACAGTTCACAAGATTGTTGGTGCTGATAAATCGGCGCTGTTGAAAAAAATAGAAGAGCTCAAGACTCCAACTGCTGCTACTACTTCTTCTACTGCTTAG 435 42.76 MAEEGQVIACHKKAEWDAHLAKAKESGKLISIDFDRILDLLDIMCIEAFHIVVDFTASWCGPCRTIAPYFSELAKNHPGVVFLKVDVDELNTVATEWEINAMPTFVFMKRGETVHKIVGADKSALLKKIEELKTPTAATTSSTA 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2652475 2653928 + Carg04024-RA Car12g00416 158032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00416 144 Pfam Thioredoxin 50 130 IPR013766 -
Car12g00416 144 ProSitePatterns Thioredoxin family active site. 52 70 IPR017937 -
Car12g00416 144 ProSiteProfiles Thioredoxin domain profile. 18 134 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00416 K03671 trxA; thioredoxin 1 - csv:101212030 189.504
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00225 Car12g00416 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01347 Car-Chr3:10188677 Car12g00416 Car-Chr12:2652475 1.15E-08 dispersed
Car05g00225 Car-Chr5:1177976 Car12g00416 Car-Chr12:2652475 5.03E-49 dispersed
Car09g00116 Car-Chr9:564670 Car12g00416 Car-Chr12:2652475 1.12E-38 dispersed
Car12g00416 Car-Chr12:2652475 Car07g00403 Car-Chr7:2044337 6.19E-33 dispersed
Car12g00415 Car-Chr12:2649762 Car12g00416 Car-Chr12:2652475 1.21E-38 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1015 . . . . . . . . Cmo05g00277 Cmo12g00390 . . . Car12g00416 . . Cpe07g00394 Bhi04g00209 . . . Hepe10g0604 . . Cla08g01456 Cam08g1941 Cec08g1515 Cco08g1654 Clacu08g1631 . Cre08g1417 . . . . . . Chy04g00470 Cme03g01919 . . . . . . . . . . . Cma12g00439 . Car05g00225 . Cpe11g00225 . . . . . . . . . . . . . . . Lsi08g01362 Csa02g02092 Chy03g01423 Cme04g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00416 Car_Chr12 FPKM 18.486889 18.439163 19.483656 16.961634 14.042109 14.610037 14.591139 28.433544 28.605135 28.201725