Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00417 ATGGAGCTGGTGAAACTTGACTTCCCGGACGAGTACTTGACGATGATCCGAGGACACTACGGTAGCTTTGTGTCATATGACCAAATTTTCGTTCGATCCCTGACATTTATGAGCAACAAAAGGAAGTATGGACCTTACGGGGTCGAACTCGGAAGAGTTTTCTCATTCCCAACGACCGAGGGCAAGCTTGTCGGGTTCCATGGCAGGAGTGGATTGTACTTGGATGCCATTGGAGTTTACCTAAAGCCTATGCCAATACAAACGCCATCTAAAGCAATTATTCAATCACAGAGTTATGTTGCTTCTAAGACAGAAAGTGAAGGCTATTCAATTATACAAGGAAGTGTTGGCCAAAATTATGATATTGTTCTTGCTGTAAAGCAGAAGGATGAACTCAAAAAGCCCCTTCCATCAAGCTCCTCAAGCTCAGAATCAAGTGATGATGAATCCATAACCAAGAGGCCTGTTAAGAAAGGACCTTCTAAAGCTGAAAATGTTGTGCCATGTGGACCCTGGGGTGGCTCAGGAGGAACTGCATTTGATGATGGATGTTACACTGGCGTTAGACAAATTAATATATCGCGCAATGTCGGGATCGTATACATAAAAGCTCTGTATGCTTGCGATGAGGAATCGATATGGGGAAGCCGGGCCGGTGGAAATGTAGGATTCAAACATGACAAGGTTATCTTGGACTATCCATATGAAATCTTGACTCATGTAACTGGACACTATGGTCCTGTAATGTACATGGGACCTAACGTTATCAAGTCACTCACATTCCATACTACAAAAGCCAAGTATGGACCATTTGGGGAGGCACAAGGAACCCCTTTCAGTACCAACGTCAAGGAGGGGAAGATTGTTGGATTTCATGGAAGGAAAGGTCTGTTCCTCGATGCTCTCGGCGTGCACATAGTAGAAGGAAAGGTGACCCCGGTGTCTCGTCCTCCGTCCAGTGATATCGTTCCTGCTACACAACCACTTCTCGAAAACGAGAGCGCCCATTGGACTAAGAAACTTGCTCCTTCAAATGGAAGACCACTTGAAGAGATGGCTCGTGTAGTAAAAGAACCAGCGCCCTGTGGACCGGGACCGTGGGGCGGGGATGGAGGGAAACCGTGGGACGATGGAGTGTTTTCTGGCATTAAACAAATATACTTGACCAAATCTCTTGAAGCTTTTTGTTCAATCCAAATTGAATATGATCGAAACAAGCAATCAGTTTGGTCAGTTAAGCATGGAGGAAACGGTGGAACGACCGTGCATCGGGTAAAACTAGATTATCCACACGAAGTTTTGACTTGTATCTCGGGATATTACGGTTACGTCGGTAAAGATGAACGACAACAAGTTATAAAGTCACTTACTTTACACACAAGTAGGGGAAAGTTCGGACCGTTCGGGGAGGAGATAGGAACCTTTTTCACGTCGACAATAACAGAGGGGAAGGTGGTTGGCTTCCATGGGAGGAGCAGCTTGTACTTGGACGCCATTGGAGTTCACATGCAGCACTGGCTAGGTAGCCAAAGATCATCCAAGTCGTCCATGTTTAGACTGTTCTGA 1566 45.66 MELVKLDFPDEYLTMIRGHYGSFVSYDQIFVRSLTFMSNKRKYGPYGVELGRVFSFPTTEGKLVGFHGRSGLYLDAIGVYLKPMPIQTPSKAIIQSQSYVASKTESEGYSIIQGSVGQNYDIVLAVKQKDELKKPLPSSSSSSESSDDESITKRPVKKGPSKAENVVPCGPWGGSGGTAFDDGCYTGVRQINISRNVGIVYIKALYACDEESIWGSRAGGNVGFKHDKVILDYPYEILTHVTGHYGPVMYMGPNVIKSLTFHTTKAKYGPFGEAQGTPFSTNVKEGKIVGFHGRKGLFLDALGVHIVEGKVTPVSRPPSSDIVPATQPLLENESAHWTKKLAPSNGRPLEEMARVVKEPAPCGPGPWGGDGGKPWDDGVFSGIKQIYLTKSLEAFCSIQIEYDRNKQSVWSVKHGGNGGTTVHRVKLDYPHEVLTCISGYYGYVGKDERQQVIKSLTLHTSRGKFGPFGEEIGTFFTSTITEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRSSKSSMFRLF 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2657909 2660602 + Carg04025-RA Car12g00417 158033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00417 521 Pfam Jacalin-like lectin domain 5 83 IPR001229 -
Car12g00417 521 Pfam Jacalin-like lectin domain 372 504 IPR001229 -
Car12g00417 521 Pfam Jacalin-like lectin domain 177 306 IPR001229 -
Car12g00417 521 MobiDBLite consensus disorder prediction 133 168 - -
Car12g00417 521 ProSiteProfiles Jacalin-type lectin domain profile. 361 505 IPR001229 -
Car12g00417 521 ProSiteProfiles Jacalin-type lectin domain profile. 1 83 IPR001229 -
Car12g00417 521 ProSiteProfiles Jacalin-type lectin domain profile. 166 308 IPR001229 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00417 - - - cpep:111798429 1006.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00134 Car-Chr9:639728 Car12g00417 Car-Chr12:2657909 7.19E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00417 Car_Chr12 FPKM 17.736111 15.406247 8.67079 8.909061 9.627855 9.457688 15.604568 16.156803 15.888179 15.067927