Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00431 ATGGGAGCCGAGCCTTTGCTTCCCACTGCCAATGAGTCTCAACCCGCCGCCCCTCTTATTCTTGGTCTTCAACCCGCTGCCCTCATCGACCATGTTGCCCGTGTCGATCCCTCTCTTCTCGATCGAATTCCCGGCGACCGCGGTGGCTCAATGCCTGTGGGAATGGAAGAGCTTGAGAATATACTGAGGGAGGTGAAATCATATATCCTTTCCTCGCCTGATGTGCTGACTCCTTTCAAGACAATAGCGGGGGGAAGTGTTGCCAACACAATTCGAGGATTGAGTGCGGGGTTTGGAGTCAGCTGTGGAATTATTGGCGCCTATGGCGATGATCAGCAAGGAAAATTGTTTGTCTGTAACATGAGCTCCAATGGGGTCAATCTCTCAAGGTTGAGGATGATTAAAGGTCCCACAGCTCAGTGTGTTTGCCTGGTCGATGCAATGGGAAATCGCACAATGCGACCCTCTCTCTCAAGTGCAGTCAAAGTTCAGGCAAATGAACTGACTAGAGATGACTTCAAAGGAGCTAAGTGGCTTGTAATGAGATATAGTATATTTAACATGGAAGTTATTGAAGCGGCTGTAAAGATGGCCAAACAAGAGAAAGTTTTTGTATCCTTGGATTTGGCCAGTTTCGAGATGGTTCGGGATTTTAGATCGCCTCTTCTCCAGCTACTAGAGTCTGGGGATATAGACCTTTGCTTTGCGAATGAGGACGAAGCAAAAGAGTTGATAGGTGGTGAGAAAGATGCTGATCCTGAAGTTGCTCTAGAATTTCTTGCGAAGCACTGTCAATGGGCTGTCGTGACGTTAGGCGCCAATGGTTGTATCGCTAAGCACGGAAAAGAGATTGTCCGAGTTCCAGCAATAGGGGAATCAAAGGCGACCGATGCCACCGGAGCAGGCGACCTGTTTGCGAGCGGATTTTTGTACGGATTAGTGAAGGGATTGTCTCTGGAGAAATGCTGTCAATTGGGGTCGTGCAGCGGTGGTTCTGTTATCCGTTCACTCGGGGGTGAGGTCACCCCAGAGAATTGGCAATGGATGCACAAACATTTGCAGATCAAAGGGCTTCCTGTCCAAGAGATCCCTCAATGA 1098 49.0 MGAEPLLPTANESQPAAPLILGLQPAALIDHVARVDPSLLDRIPGDRGGSMPVGMEELENILREVKSYILSSPDVLTPFKTIAGGSVANTIRGLSAGFGVSCGIIGAYGDDQQGKLFVCNMSSNGVNLSRLRMIKGPTAQCVCLVDAMGNRTMRPSLSSAVKVQANELTRDDFKGAKWLVMRYSIFNMEVIEAAVKMAKQEKVFVSLDLASFEMVRDFRSPLLQLLESGDIDLCFANEDEAKELIGGEKDADPEVALEFLAKHCQWAVVTLGANGCIAKHGKEIVRVPAIGESKATDATGAGDLFASGFLYGLVKGLSLEKCCQLGSCSGGSVIRSLGGEVTPENWQWMHKHLQIKGLPVQEIPQ 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2754911 2757319 - Carg04039-RA Car12g00431 158047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00431 365 CDD adenosine_kinase 18 338 - -
Car12g00431 365 PANTHER SUGAR KINASE 12 356 - -
Car12g00431 365 SUPERFAMILY Ribokinase-like 27 339 IPR029056 -
Car12g00431 365 Pfam pfkB family carbohydrate kinase 79 339 IPR011611 -
Car12g00431 365 Gene3D - 25 342 IPR029056 -
Car12g00431 365 PANTHER CARBOHYDRATE KINASE-LIKE 12 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00431 - - - mcha:111014039 667.537
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00214 Car12g00431 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00332 Car-Chr6:1810836 Car12g00431 Car-Chr12:2754911 1.52E-14 dispersed
Car12g00431 Car-Chr12:2754911 Car02g00768 Car-Chr2:5610830 1.02E-13 dispersed
Car14g00191 Car-Chr14:900327 Car12g00431 Car-Chr12:2754911 2.61E-07 dispersed
Car02g00801 Car-Chr2:5845048 Car12g00431 Car-Chr12:2754911 8.92E-11 transposed
Car19g00268 Car-Chr19:3278851 Car12g00431 Car-Chr12:2754911 1.44E-10 transposed
Car12g00431 Car-Chr12:2754911 Car05g00214 Car-Chr5:1110518 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g967 . . . . . . . . Cmo05g00262 Cmo12g00406 . . . Car12g00431 . . Cpe07g00408 Bhi04g00190 . . . Hepe10g0623 . . Cla08g01471 Cam08g1959 Cec08g1534 Cco08g1672 Clacu08g1649 . Cre08g1434 Cone4ag1920 Cone7ag1832 . . . . . Cme03g01937 Blo17g00786 . Bda08g01276 . . Bpe05g00101 . Bma05g00129 . . . Cma12g00456 Cma05g00257 Car05g00214 . Cpe11g00212 . . . . . . . . . . . . . . . Lsi08g01381 Csa02g02070 Chy03g01442 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006701 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00431 Car_Chr12 FPKM 0.0 0.0 0.0 0.0 0.328289 0.0 0.283907 0.303873 0.256772 0.22962