Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00436 ATGTCTCGTTCGCGCGGTTTCTTTCAGGCTTGTACAGCGATTGTGATTTGTGTGCTCGTGGCGGAGTTTACAGCGGCGATGGCGAAAACAGCGATTCTGATCACTGTCGATCAATCCGGTAGAGGAAATTTTACGAAGATTCAAAACGCGATTGATGTGGTGCCTGAAAATAATTTGGAGGAAGTGTTTATTGCTGTGAAGCCGGGGATTTACAGAGAGAAGGTGACTGTACCAGCGAATAAACCGTACATTACGATCAGTGGAAGAAGATCATCTGATACTATCATTACTTGGAATGATAGCAGAAATACATATAATTCTGCAACTCTTGCGGTTTTGGCCTCTGATTTCGTTGGACGATACCTCACGATTCAGAACGGGTTCGGGGCGGGTGCGCAAGCGGTGGCGTTACGGGTATCCGGAGACCGAGTTTCATTTACCGCCTGCAGATTTCTGGGTCATCAAGACACTCTGCTAGACGACATCGGCCGCCATTACTACAGAAGCTGTTACATAGAAGGAGCCACCGACTTCATCTGCGGAAACGGGGCTTCACTTTTCGAGAATTGCCATCTGCATTCGGTGTCGGACTCCGTCGGGACCATCACGGCCCAACGGAGAGAGTCGCCGTCGGAGAACACTGGGTTCGTGTTTATGGGGTGCAAGATCACCGGAATCAACTCCGCCGTTCTGGGTCGGCCGTGGGGGGCGTTCTCTAGGGTCGTGTTTGGATTCACTTACATGTCTGATGTTATTCTCCCCGAGGGTTGGGACAACTGGCAAGACCCATCCAAACAGAGCACTGTGTACTATGGACAATACAGATGTTACGGAAAAGGAGCCAATCCATCCAGAAGGGTACCATGGTCATTTACCAACATGACCACCCAAGAAGCTGCACCATTCTTCTCCAAAACCTTCATTGGCGCTGCACATTGGCTCAGGCCTTTACCCACCAATTTCAAGAGAGCCTTCGCTTCCAAACCCTAA 990 49.9 MSRSRGFFQACTAIVICVLVAEFTAAMAKTAILITVDQSGRGNFTKIQNAIDVVPENNLEEVFIAVKPGIYREKVTVPANKPYITISGRRSSDTIITWNDSRNTYNSATLAVLASDFVGRYLTIQNGFGAGAQAVALRVSGDRVSFTACRFLGHQDTLLDDIGRHYYRSCYIEGATDFICGNGASLFENCHLHSVSDSVGTITAQRRESPSENTGFVFMGCKITGINSAVLGRPWGAFSRVVFGFTYMSDVILPEGWDNWQDPSKQSTVYYGQYRCYGKGANPSRRVPWSFTNMTTQEAAPFFSKTFIGAAHWLRPLPTNFKRAFASKP 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2773922 2776223 + Carg04044-RA Car12g00436 158052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00436 329 Pfam Pectinesterase 34 309 IPR000070 GO:0030599|GO:0042545
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00436 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101215800 572.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00436 Car-Chr12:2773922 Car15g01027 Car-Chr15:8018790 7.37E-85 dispersed
Car15g00254 Car-Chr15:1395372 Car12g00436 Car-Chr12:2773922 4.32E-70 dispersed
Car17g00093 Car-Chr17:538421 Car12g00436 Car-Chr12:2773922 5.04E-73 transposed
Car17g00963 Car-Chr17:7800627 Car12g00436 Car-Chr12:2773922 8.39E-19 transposed
Car12g00436 Car-Chr12:2773922 Car02g00256 Car-Chr2:1743719 2.17E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00436 Car_Chr12 FPKM 16.025736 17.025738 62.834705 61.740242 29.193134 32.552536 30.74811 28.048347 26.653118 27.341152