Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00442 ATGGATATGCGAGAGCAGGAGAAGGAAGTAATGATGCCTGCTGCTTCTGGCGGTGGAGGCGGATATGCGCATATTTTTGGGGAAACGTCGTCTGGAGTTTTGGAGAGGAGAATCGAGTCGGTTCATAATGGTTCTCATCATCATATCCAACCAGAGCATCTCGACGCTGATCTTGTTGCTGGAGAGGATGTTAGCGGCGGCGGCGGCGGTGGCGGTGGCGGTGGTGGTGGTGGTGGTGGTGGAGGTGGAGGTAGATCCAAGGTGAGAGGAGCGGGGACTGGAGTTAGGTATCGGGAGTGTTTGAAGAATCACGCGGCGAGCGTTGGGGGGAATATATACGACGGATGCGGGGAGTTTATGCCTAGTGGTGAAGACGGAACCCTAGAGGCTTTGAAATGTGCCGCCTGTGAATGTCATCGAAACTTCCACCGGAAAGAAATTGACGGCGAGAATCAATTAAGTATCGGTGCTAATTACAGAAGAGGATTAATGTTACCTCATCTCCAGCTTCCTGCGCCATTACCGTCTCCTTCCGCTCTCCACGGACACCATAAATTCTCCATGGCGTTGAATCTCCATTCCAGTCCTACCGCTCCGATCATCGCTCCAATGAACGTCGCCTACGCCGGTGGTGGCGGAACCGAGTCTTCCAGCGAGGATTTGAACGTCTTCCAATCAAATGCCGAGGTCATGCCGCCGTCTTCCTACACCTTATCGAAAAAGCGCTTCCGTACGAAGTTCACACAGGAGCAAAAGGATCGAATGCTCGAGTTCGCAGAGAAGATCGGATGGAGGATTCAGAAACAAGATGAAGAAGAAGTGGAGAGATTCTGTAGTGAAGTCGGAGTGAAACGGCAAGTCCTCAAAGTCTGGATGCACAACAACAAGAACACAGTGAAGAAGCAGAACGACAATAACGAACCAGAACTTGCCGTTGCCGTTGCCGTCGCCGGTGCCGGTGCCGGTTCCGGTGCCGCCGTGATGAGTGAATCATAG 996 52.51 MDMREQEKEVMMPAASGGGGGYAHIFGETSSGVLERRIESVHNGSHHHIQPEHLDADLVAGEDVSGGGGGGGGGGGGGGGGGGGRSKVRGAGTGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIDGENQLSIGANYRRGLMLPHLQLPAPLPSPSALHGHHKFSMALNLHSSPTAPIIAPMNVAYAGGGGTESSSEDLNVFQSNAEVMPPSSYTLSKKRFRTKFTQEQKDRMLEFAEKIGWRIQKQDEEEVERFCSEVGVKRQVLKVWMHNNKNTVKKQNDNNEPELAVAVAVAGAGAGSGAAVMSES 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2802897 2803892 - Carg04050-RA Car12g00442 158058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00442 331 Pfam ZF-HD protein dimerisation region 95 147 IPR006456 -
Car12g00442 331 MobiDBLite consensus disorder prediction 60 87 - -
Car12g00442 331 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 97 146 IPR006456 -
Car12g00442 331 ProSiteProfiles 'Homeobox' domain profile. 238 302 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00442 - - - csv:101216040 478.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00499 Car-Chr7:2500572 Car12g00442 Car-Chr12:2802897 2.45E-67 dispersed
Car12g00201 Car-Chr12:1262779 Car12g00442 Car-Chr12:2802897 9.63E-26 dispersed
Car04g01920 Car-Chr4:11409919 Car12g00442 Car-Chr12:2802897 4.41E-63 transposed
Car06g00004 Car-Chr6:53289 Car12g00442 Car-Chr12:2802897 4.22E-58 transposed
Car12g00442 Car-Chr12:2802897 Car03g00680 Car-Chr3:6018644 1.63E-65 wgd
Car12g00442 Car-Chr12:2802897 Car05g00207 Car-Chr5:1077208 1.60E-176 wgd
Car12g00442 Car-Chr12:2802897 Car07g00426 Car-Chr7:2171365 1.61E-70 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00476 . 55 239 ZF-HD Transcription Factor Family AT4G24660 54.3 9.6e-50 194.1
Car12g00442 . 89 299 ZF-HD Transcription Factor Family AT4G24660 50.7 3.1e-48 189.1
Car04g00784 . 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 3.4e-47 185.7
Car04g01920 . 81 280 ZF-HD Transcription Factor Family AT2G02540 55.3 2.4e-51 199.9
Car06g00004 . 69 261 ZF-HD Transcription Factor Family AT2G02540 51.0 2.2e-49 193.4
Car04g01920 . 78 283 ZF-HD Transcription Factor Family AT1G14440 55.2 4.2e-56 215.7
Car06g00004 . 66 261 ZF-HD Transcription Factor Family AT1G14440 54.8 2.5e-53 206.5
Car07g00426 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.4e-52 203.8
Car14g00535 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.5 7.3e-49 191.4
Car04g02663 . 6 246 ZF-HD Transcription Factor Family AT5G15210 50.2 2.8e-48 189.5
Car15g00270 . 36 258 ZF-HD Transcription Factor Family AT5G15210 54.6 5.8e-46 181.8
Car11g00862 . 13 289 ZF-HD Transcription Factor Family AT5G15210 50.4 1.4e-44 177.2
Car04g02663 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 5.5e-56 215.3
Car14g00535 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.5 7.1e-56 214.9
Car11g00862 . 23 255 ZF-HD Transcription Factor Family AT3G28920 60.4 4.3e-53 205.7
Car15g00270 . 35 260 ZF-HD Transcription Factor Family AT3G28920 57.6 6.2e-52 201.8
Car04g02663 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 4.3e-51 199.1
Car15g00270 . 37 264 ZF-HD Transcription Factor Family AT5G39760 56.2 4.8e-50 195.7
Car14g00535 . 30 254 ZF-HD Transcription Factor Family AT5G39760 55.8 2.4e-49 193.4
Car11g00862 . 31 283 ZF-HD Transcription Factor Family AT5G39760 61.0 4.5e-48 189.1
Car04g02663 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.9 7.7e-50 194.5
Car18g01061 . 1 185 ZF-HD Transcription Factor Family AT1G69600 52.3 1.0e-49 194.1
Car15g00270 . 70 261 ZF-HD Transcription Factor Family AT1G69600 51.0 9.5e-48 187.6
Car04g01920 . 81 280 ZF-HD Transcription Factor Family AT2G02540 55.3 2.4e-51 199.9
Car06g00004 . 69 261 ZF-HD Transcription Factor Family AT2G02540 51.0 2.2e-49 193.4
Car05g00476 . 55 239 ZF-HD Transcription Factor Family AT4G24660 54.3 9.6e-50 194.1
Car12g00442 . 89 299 ZF-HD Transcription Factor Family AT4G24660 50.7 3.1e-48 189.1
Car04g00784 . 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 3.4e-47 185.7
Car04g02663 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 4.3e-51 199.1
Car15g00270 . 37 264 ZF-HD Transcription Factor Family AT5G39760 56.2 4.8e-50 195.7
Car14g00535 . 30 254 ZF-HD Transcription Factor Family AT5G39760 55.8 2.4e-49 193.4
Car11g00862 . 31 283 ZF-HD Transcription Factor Family AT5G39760 61.0 4.5e-48 189.1
Car07g00426 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.4e-52 203.8
Car04g02663 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.9 7.7e-50 194.5
Car18g01061 . 1 185 ZF-HD Transcription Factor Family AT1G69600 52.3 1.0e-49 194.1
Car15g00270 . 70 261 ZF-HD Transcription Factor Family AT1G69600 51.0 9.5e-48 187.6
Car14g00535 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.5 7.3e-49 191.4
Car04g02663 . 6 246 ZF-HD Transcription Factor Family AT5G15210 50.2 2.8e-48 189.5
Car15g00270 . 36 258 ZF-HD Transcription Factor Family AT5G15210 54.6 5.8e-46 181.8
Car11g00862 . 13 289 ZF-HD Transcription Factor Family AT5G15210 50.4 1.4e-44 177.2
Car04g01920 . 78 283 ZF-HD Transcription Factor Family AT1G14440 55.2 4.2e-56 215.7
Car06g00004 . 66 261 ZF-HD Transcription Factor Family AT1G14440 54.8 2.5e-53 206.5
Car04g02663 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 5.5e-56 215.3
Car14g00535 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.5 7.1e-56 214.9
Car11g00862 . 23 255 ZF-HD Transcription Factor Family AT3G28920 60.4 4.3e-53 205.7
Car15g00270 . 35 260 ZF-HD Transcription Factor Family AT3G28920 57.6 6.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4407 PF04770 ZF-HD_dimer 5.80E-30 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00442 Car_Chr12 FPKM 0.476765 0.276983 1.113913 1.903944 3.38788 3.004128 2.673125 5.109101 2.816024 3.434386