Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00442 | ATGGATATGCGAGAGCAGGAGAAGGAAGTAATGATGCCTGCTGCTTCTGGCGGTGGAGGCGGATATGCGCATATTTTTGGGGAAACGTCGTCTGGAGTTTTGGAGAGGAGAATCGAGTCGGTTCATAATGGTTCTCATCATCATATCCAACCAGAGCATCTCGACGCTGATCTTGTTGCTGGAGAGGATGTTAGCGGCGGCGGCGGCGGTGGCGGTGGCGGTGGTGGTGGTGGTGGTGGTGGAGGTGGAGGTAGATCCAAGGTGAGAGGAGCGGGGACTGGAGTTAGGTATCGGGAGTGTTTGAAGAATCACGCGGCGAGCGTTGGGGGGAATATATACGACGGATGCGGGGAGTTTATGCCTAGTGGTGAAGACGGAACCCTAGAGGCTTTGAAATGTGCCGCCTGTGAATGTCATCGAAACTTCCACCGGAAAGAAATTGACGGCGAGAATCAATTAAGTATCGGTGCTAATTACAGAAGAGGATTAATGTTACCTCATCTCCAGCTTCCTGCGCCATTACCGTCTCCTTCCGCTCTCCACGGACACCATAAATTCTCCATGGCGTTGAATCTCCATTCCAGTCCTACCGCTCCGATCATCGCTCCAATGAACGTCGCCTACGCCGGTGGTGGCGGAACCGAGTCTTCCAGCGAGGATTTGAACGTCTTCCAATCAAATGCCGAGGTCATGCCGCCGTCTTCCTACACCTTATCGAAAAAGCGCTTCCGTACGAAGTTCACACAGGAGCAAAAGGATCGAATGCTCGAGTTCGCAGAGAAGATCGGATGGAGGATTCAGAAACAAGATGAAGAAGAAGTGGAGAGATTCTGTAGTGAAGTCGGAGTGAAACGGCAAGTCCTCAAAGTCTGGATGCACAACAACAAGAACACAGTGAAGAAGCAGAACGACAATAACGAACCAGAACTTGCCGTTGCCGTTGCCGTCGCCGGTGCCGGTGCCGGTTCCGGTGCCGCCGTGATGAGTGAATCATAG | 996 | 52.51 | MDMREQEKEVMMPAASGGGGGYAHIFGETSSGVLERRIESVHNGSHHHIQPEHLDADLVAGEDVSGGGGGGGGGGGGGGGGGGGRSKVRGAGTGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIDGENQLSIGANYRRGLMLPHLQLPAPLPSPSALHGHHKFSMALNLHSSPTAPIIAPMNVAYAGGGGTESSSEDLNVFQSNAEVMPPSSYTLSKKRFRTKFTQEQKDRMLEFAEKIGWRIQKQDEEEVERFCSEVGVKRQVLKVWMHNNKNTVKKQNDNNEPELAVAVAVAGAGAGSGAAVMSES | 331 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2802897 | 2803892 | - | Carg04050-RA | Car12g00442 | 158058 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00442 | 331 | Pfam | ZF-HD protein dimerisation region | 95 | 147 | IPR006456 | - | |
| Car12g00442 | 331 | MobiDBLite | consensus disorder prediction | 60 | 87 | - | - | |
| Car12g00442 | 331 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 97 | 146 | IPR006456 | - | |
| Car12g00442 | 331 | ProSiteProfiles | 'Homeobox' domain profile. | 238 | 302 | IPR001356 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car07g00499 | Car-Chr7:2500572 | Car12g00442 | Car-Chr12:2802897 | 2.45E-67 | dispersed | |
| Car12g00201 | Car-Chr12:1262779 | Car12g00442 | Car-Chr12:2802897 | 9.63E-26 | dispersed | |
| Car04g01920 | Car-Chr4:11409919 | Car12g00442 | Car-Chr12:2802897 | 4.41E-63 | transposed | |
| Car06g00004 | Car-Chr6:53289 | Car12g00442 | Car-Chr12:2802897 | 4.22E-58 | transposed | |
| Car12g00442 | Car-Chr12:2802897 | Car03g00680 | Car-Chr3:6018644 | 1.63E-65 | wgd | |
| Car12g00442 | Car-Chr12:2802897 | Car05g00207 | Car-Chr5:1077208 | 1.60E-176 | wgd | |
| Car12g00442 | Car-Chr12:2802897 | Car07g00426 | Car-Chr7:2171365 | 1.61E-70 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4407 | PF04770 | ZF-HD_dimer | 5.80E-30 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00442 | - | - | csv:101216040 | 478.018 |