Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00446 ATGCGAATTCCTAGGAGACAGCTATCCTTTTGCCTCTCCTTGTTTTCGCTCGAGTTCTCATACCCTGTTTCCCCTCGAAACTTTCTTGGAGTTCCCAAAGGGATTCATACACTAAGATTAAATCGGTCGTGTGCTATTGGTGCCATGGGTGAGAATCTAGGGACTGTCATGAAGGACAAGAGAACGCATTCTCTGGATGTCCAGCAACCATGCATATGGTCATCATCAGTAGAATGCAATATTGACATAGGAAAGCAGATTTTTTGCAATAGATCTTTGAATATGAAAAATATTGTTGCCGTGGGGTTCGACATGGATTACACGTTGGCACAATACAAGCCAGAAACTTTCGAGTCCCTTGCATATGAAGGCACAATAAGAAAGCTGGTTTATGATTTGGCGTATTCCGAAGAGTTGCTGAATTGGTCATTTGATTGGAAATACATGGTCAGAGGTTTGGTTCTTGACAAAAGGAGAGGCAACATATTGAAGATGGATAGGCACAAGTATGTCAAAGTGGCCTATCATGGTTTCAAAGAGTTGTCCAAGGATGATAAAGTCGAGACCTATGGAAGTACTCTAGTACGGGATTCGTTTGACGAACCCGACTATGCTCTCATTGATACCCTTTTTTCATTAGCTGAAGCTTACTTGTTTGCTCAACTGGTTGACTTTAAGGACAATAATCCAGACAAAGTTCCAGAGGATGTCGATTATGCTCGAATGTATAAAGATGTTAGAGCTGCCGTAGATATGTGTCACCGCGACGGAACCTTAAAGCAAATGGTTGCAAAGGATCCCGAAAGGTTTATCAATGTGGATACCTCAATTGTACCCATGCTTAAAATGCTCAGAGATTCTGGCCGTTCTACTTTCTTGGTGACAAACAGCTTATGGGACTATACGAACGTTGTGATGAACTTTCTTTGTACTTCTTCTGCACCAGATGGTGATCAGAAGTGCAATTTAGATTGGCTTCAGTATTTCGATGTCGTCATTACTGGCAGGTGTCTTTTTCTGCTTGATAGTCTTAGCATCGACAACAAAACAGTACCTCATGGACAACAAAGCAGTACCTGTAGGCGCTGTTGTCTCAATCCCTTGGCTCTGTTTTCTGAAAAAATCTGTACAAACAGTGCTAAACCAGGCTTTTTCCATGAGGACAACCGTGCTAATCTATTTGGGGTCGAACCGAAGTCGGGAATGCTACTTAATACGGATAATGGCTCGCCTTTGCCTCAGGTGGGAAACACTTCAGAAGCGTCTTCACCGACGAAGGTAGATAAATCTTGCAAAGTTTTTCAGGGAGGCAATGTCATGCATCTGCATAAACTTCTTCAAATTGAATCAAGTTCGCAGGTTCTCTATGTCGGGGATCACATCTATGGAGATATATTACGAAGCAAAAAGGCTCTCGGATGGAGGACTATGCTTGTTGTTCCAGAGCTCGGAAGGGAGGTCGAGCTCTTATGGGAGTTGAGGAAGACACGCAAGCAACTTCAGCTATTAAGAAATGATCGGGATGCCATCGAAGACAAAATACATCATTTGAAGTGGTCTCTCAAGTTTGAAGACGTCGAGGCTGATGAAAAGGAGAGACTATCTGCTGAACTACATCAGTTAGAGAGATTTGCATGCCTTTACAGCAGCCAAGTGACCAACTTGAGCCTTTATTCCCCAGCTAAATACTACAGGCCAAGTGAAGATTTTATGCCCCATGAATTTGGTATCATCCCTCTATGA 1743 42.8 MRIPRRQLSFCLSLFSLEFSYPVSPRNFLGVPKGIHTLRLNRSCAIGAMGENLGTVMKDKRTHSLDVQQPCIWSSSVECNIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLAYSEELLNWSFDWKYMVRGLVLDKRRGNILKMDRHKYVKVAYHGFKELSKDDKVETYGSTLVRDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDNNPDKVPEDVDYARMYKDVRAAVDMCHRDGTLKQMVAKDPERFINVDTSIVPMLKMLRDSGRSTFLVTNSLWDYTNVVMNFLCTSSAPDGDQKCNLDWLQYFDVVITGRCLFLLDSLSIDNKTVPHGQQSSTCRRCCLNPLALFSEKICTNSAKPGFFHEDNRANLFGVEPKSGMLLNTDNGSPLPQVGNTSEASSPTKVDKSCKVFQGGNVMHLHKLLQIESSSQVLYVGDHIYGDILRSKKALGWRTMLVVPELGREVELLWELRKTRKQLQLLRNDRDAIEDKIHHLKWSLKFEDVEADEKERLSAELHQLERFACLYSSQVTNLSLYSPAKYYRPSEDFMPHEFGIIPL 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2817682 2824520 + Carg04054-RA Car12g00446 158062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00446 580 Coils Coil 493 513 - -
Car12g00446 580 Pfam 5' nucleotidase family 374 539 IPR008380 -
Car12g00446 580 Pfam 5' nucleotidase family 87 335 IPR008380 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00446 - - - csv:101216999 917.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00446 Car-Chr12:2817682 Car17g00376 Car-Chr17:2411864 8.10E-50 dispersed
Car12g00446 Car-Chr12:2817682 Car05g00201 Car-Chr5:1049387 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00446 Car_Chr12 FPKM 101.0 102.989212 16.314705 17.754034 5.931956 7.632415 6.928957 1.338748 0.886627 0.871987