Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00452 ATGGCCGGCCGCTTTGAGTTTGGTTCTCGTCCTAATCTCTCTGTTTCCAGTCCTCTCCATGCCGCCAGTGATGTTCAGGGATCTGAAAATCCTATTCCTCTTTCACCACAGTGGCTTCTGCCTAAGCCTGGGGAGAGTAAGCATGGAATTGGAAGTGGGGAAAACCATTTCAGTCATCAACCTGCTCATGGAAACCGGGTGGACATGATGAAGGGATCAGAGAACTATGAGGATATGAGTGACATACAAAAGAAAAAAGACATTTTTAGGCCATCCTTGACTGATACTGAAATTGGTAGGCGTGACCGTTGGCATGATGAAGAAAGAGAAAATAATTCTTCAATGCGTAAAGATCGTTGGAGGGATGGTGAGAAAGAGGTAGGTGATAGTCGTAAGATGGACCGTTGGACTGAAGACTCGTCAACCAAACTCTTTAGAGAATCTCGTCGAGTCCCATCAGAACGCAGGTCTGATTCAAGCAATCGGGATAATGTTCATTATGATCAACGACGTGAGAGCAAATGGAATACACGTTGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAGAAGCGGGTGGACTCTGGAAGAGATGGTGATTTGCATCTTGATAAAAATTTCTCTCATGTGTCCAATTATGGGAAAAATGACCGGGATGGAGATCATTATCGGCCATGGAGATCTAGTTCCTCTCAGGGTCGAGGTAAGGGAGAACCCCCTCACCATCAGACCCATACTCCAATCAAACAGGTGCCTACATTTTCCCATCGTGGACGTGCAGACAACACACCTCCTACCTTCTCCTCGGGTCGTGGAATCATCAGTTCTGGTGTAAACCCTACAAATAGTATTTATTCATCTTCTAATTCTCTTGGAGCTTCCTCTGAGAGATTTGGAAGAGAGCCTTTCCACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTTCAGGACTACCAATCTGACATCACAGCAAACTCTCAAAGATGGATTTGTGCCAGTGCCTACTCTTACGCTGGATGAACCATTGGAGCCTCTTGCTCTTTGTGCACCAACTACAGAAGAAATGAATTTCTTGAAGGGGATTGATAAAGGGGAAATTGTTAGTAGTGGTGTACCTCAAGTATCAAAGGACGTTCGAAACTCATCAGAAAATATGCAGACAAGACGAACAAAACTTGGTGTTTCACCTTCCCCAGGCAACAGAGAAGATTTACCTCATGGCTTTGATGATTACAATGATGATAAGGATGATAGCACCGCTAAACCAGGTCACACAAACTATTCAGAGGTCTCTACCGAGAGGCAGGTGCCTTATCGTAGGCCCCAGTCAAAAATTGAAACGATTCAGGAACGCATGGCACATGCTAGTAGCAAGTTCAAATCTGAAGGTTTCAGAGAAGATGACAATGCTATGAGTAAAGCAGATGAGGTGCCTGTCAGTAGGGACTCAAGTGTTAAGGGGGGTACCAATGTTCATCCTGACAGTTCGTGGAACGCCTCATCACTTGAGCAACCCCGGAATACATCCTTGTCTGACTGGAGAGATAATTCTAATAATATTAGCTCAGGAACTTCTGACAAGGGTTGGCTACAGCCTTCAAAGAGTCTTAATGATGGGTGGGGAAATAATCCAGCTACTCCATCTTATCCAAAGGACAATTCCAAATGGCAGACTGGGGAAGAATCTATCATTAGAAGGCAGATTTCAGGGATTTTGGACAAGGAACAACTAGCAAGAAAATCTGTTCAACCTTCTCCAGAGGATTTGCAATTTCATTACATTGATCCTTCTGGTGCAATTCAAGGCCCATTTAGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGGTATTTTGGCTTAGAGTTGCCTGTCCGTCTGGCAAATGCACCAAATGACGTGCCATTTTCAGCACTTGGTGATGTCATGCCTCATTTACGATCTAAAGCCAAACCACCACCAGGATTTAACGCACCAAAGGCTAATGAATTTGCAGATACATTAAGTAATGCTAGTTATGGTAGCTTGGGAAAGCTTCATACTGGTTTGAATGAGATTGATACTTTGAGGAATGAGACAAGGCATAAACATGGCCCAGCGGTGGAAGCTGAAAACAGATTTTTGGAGTCACTTATGTCTAGTAATAAAGGTTCTTCCCCTCTCGAGAAGGGTGCCTTTTCTGAAGGTGTGCCAGGATATTTTGGAACTAATAATTTGTCTTCCTTGGGAATGGACAATGGGAACAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAACGGCAAAGGTCTTTGACCAATCCTTATGCATTCTGGCCTGGGATAGATGCTACTTCCAAGGTTTCTAAGCCGGATATTAGCCTAGATGATCCAATTCAGCAAGCAAAGCTCTTGTCTTCAATCATAGACCAATCTCGTCAAACTGCTCAAAGTGCCGACATGTCAGCCATTCTACAAGGCTTGTCTGACAAAGCACCTCCAGGCATTAGTGATGTTGCTGGCTGGTCAAAATTTGCTTCACAGCATGCTTCTGATCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACGTGCCCTTACAGGCACCTTTCGGTTTCCAACAGCAGAGATTACCACCACAAATGTCCCTGGCAAATGTATTGGCTCAGGCTACTGATAATTCTACCTCAACTCCAGATAAGTTTCTTCCTTCTAGTTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAACAGCATCTGTTGCAGTTGCAGTCTCAAGTGCCCTTCTCTGCACAACAAATGTCGTTGTTGGACAAACTTTTACTACTTAAGCAGCAGCAAAAACAAGAAGAGCAACAACAGTTATTACAGCAACAGCAGTTGCTCTCCCAGGTTCTATCAGAGCATCAGTCACGTCAGCATTTTGGCGATCCAGCTTTTGGACAATTACAGGGCGCTCCAATATCTATTGGAAATGCATCTATTGATCCATCTCAAGTTCAGCTATCACGAGAGCAGTTACAGATTGGTTCACAGAAGCCACCAAATGTACTAACTGATCGTGCAACTACCTTCGGGAATATAGCTCTGCAAGTTACCCAGGGAGCAAATTACAATGTTAATTCGGAAGATCCGTCCCTTGTTGTTCCACACCAAATGTTTGGAAATGTTGTTCAGCAAAAGAGTTGGAATGCTGCTCTTCCGGAGCAGCTTAATGATATTCATCCAAAAGATATGTTACCAGGATCTAAATCAAACGAGGATGTGAATCTTGTACCAACTTCATTTGACAGCGACACTGTTAAAGCTTTGGAGCAGATATCAGAGGATGTACCAAGGGTGGACGCAACTGTCACATCTATTGCATCTGATGTTTCAGTAGAACCTCTTCCTCTCAGAAATGATGAAGTCTCAGTTGCTAGACCACCAGCCGAAGTTCGCGATATTGAAATTCCTGTTCCCATTAGTGTACCCGTTGTGAAGGTTGAAGATGCTAGTACGCCTGTGGAGAAGCTTGAAAGGAATGTATGCAAAGATGATACCTCTGTGGAGACGGAATTGAAAAATGTTGAAGCGCAAGAACCTAGAAAATCTTGTGATAAGAAGACCAAGAAGCAAAAATCTTCAAAGTTGCTTTCCTCTGACCAGGCCAAGTACTCTAAGAATTCTGCTATTCAACAGTCAAAGCAACCAAAAAATGGTAAACCAGAAAATGACTTGAAATTGAAGGAAGATAATCTTGTGGGAAAATCAAGTGATACGTCATCCTCTCCTCAGAAGACCAGGGATGGGGATGCCAAAATTTCCCATGTGGATAGTCAACCAGCCTCTGCTTGGAATGATAGTGTAACTGATCAAGTGAAGTATGACACCAGACTAATTGGCTCTGATTCTGGGGTTAACTCACAAATTCAATCTTGTCAAAGAGCTTGGAAAGTTGCTACGAGTTTCAAGGCAAAGTCGTTATTGGAAATTCAGGAGGAAGAGCAGAAAAGGGCACATATAGAACCTGCTGTGTCAGAGATTTCAACTGCTATCAATTCTATGAGTTTATCAACTCCGTGGGCCGGGGTTGTGAGCAATTTGGACCCAAAAGCTTCCAGAGAAACTCATAAAGATTCTATGAATTCTGAACCAATTGAGAAACATGAAAATTTATTGAACTTGAGGAGTAGAAAGAGTCAATTGCATGATCTACTGGCGGAAGATGATATGGAGAAGTCTGGTGCAGGTGTTGTTCGCGTTTCTGACTCGATTCAGATTGCTTCTTCTCCTCAGGTCGTGGCCACACAAGCAGAACCTATGGATGACAATTTTATTGAGGCAAAAGACACCAAAAAGAGCCGTAAGAAATCTGCCAAGGCTAAGGGCGTTGGTATAAAGGCCTCCTCTTCAGTCCCTTCCGCTGATGTGCCTGTTGGTTCAAGTCCCATTGAGAAAGTGAAAATCTCCCGCCAGACACAGCAGGAGAAGGATGCAATGCCTGCCATCCCTTCGGGGCCTTCTTTTGGTGATTTTGTTCTATGGAAGGGAGAAGCTGCGAATGTGGCCCCTGCACCAGCATGGTCTAGTGACTCTGGTAAGTTCCCCAAACCCACATCTTTGAGGGATATTCAGAAGGAGCAGGAAAGAAAAATCTCTGCTGCTCAGCATTCACATCAAATCCCCACTCCGCAAAAGGCTCAGCCAACTCAGGTTGGTCGTAGCAGTAGCAGTAGTACTCCTTCCCGGGCTCTTTCTGCTTCTTCCCCATCGAAGGTTGCATCATCCCCCCTGCAGAACACTCCTTCTCAGTCAAAGTATGGAGGTGATGATGACCTATTTTGGGGGCCCATTGAGTCGAAGCAAGAAAATCAGCAGGTTGATGTCCATCTTGGGAGCCATGGAAGCTGGGGAAATAGAAACACTCCTGCAAAAGCAGCAGCAGCAGCTTCAACTGGGTTGTTAAGCCGGCAAAAATCATCTAGTGGCAGAGCCGACACAGCTTCAACTGGGTTGTTAAGTCGACAAAAATCATCGAGTGGCAAAGCAGATTATCTTTCACCATTGCCTGCACAGTCGTCTCAGAAAGGCAAACAAGACACAGTTACCAAGCATTCAGAAGCTATGGACTTCTGCGATTGGTGTGAGCGTGAATGTGCAAGGCTCCTTGGGACTAAAGACACAAGTTTCCTGGAATTCTGCTTGAAGCAATCAAGATCTGAGGCAGAGCTGCTTTTGATAGAGAACCTTGGATCTTATGATCCCGACCATGAGTTCATAGATCAATTCCTCAATTACAAGGAGTTGCTCCCAGCAGATGTTCTTGAAATTGCATTTCAAAGTCAGAACGATAGGAAGGTATTTGCAGTAGCTGCCCGAGAAGTGAATTCTGGCCATGCTGGTCGAAATCTGGACCCGGATGCCCCCGTTGGCGGTGATGGGTCCGCAAAGGGTGGAGGAAAGAAGAAAGGAAAGAAAGGGAAGAAGGTAAGTCCATCAGTTTTGGGTTTCAATGTAGTTAGTAATCGAATTATGATGGGTGAGATTCAGACCGTTGAAGATTAG 5538 44.35 MAGRFEFGSRPNLSVSSPLHAASDVQGSENPIPLSPQWLLPKPGESKHGIGSGENHFSHQPAHGNRVDMMKGSENYEDMSDIQKKKDIFRPSLTDTEIGRRDRWHDEERENNSSMRKDRWRDGEKEVGDSRKMDRWTEDSSTKLFRESRRVPSERRSDSSNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSSQGRGKGEPPHHQTHTPIKQVPTFSHRGRADNTPPTFSSGRGIISSGVNPTNSIYSSSNSLGASSERFGREPFHYKYSRTKLLDVFRTTNLTSQQTLKDGFVPVPTLTLDEPLEPLALCAPTTEEMNFLKGIDKGEIVSSGVPQVSKDVRNSSENMQTRRTKLGVSPSPGNREDLPHGFDDYNDDKDDSTAKPGHTNYSEVSTERQVPYRRPQSKIETIQERMAHASSKFKSEGFREDDNAMSKADEVPVSRDSSVKGGTNVHPDSSWNASSLEQPRNTSLSDWRDNSNNISSGTSDKGWLQPSKSLNDGWGNNPATPSYPKDNSKWQTGEESIIRRQISGILDKEQLARKSVQPSPEDLQFHYIDPSGAIQGPFSGADIIQWFEGGYFGLELPVRLANAPNDVPFSALGDVMPHLRSKAKPPPGFNAPKANEFADTLSNASYGSLGKLHTGLNEIDTLRNETRHKHGPAVEAENRFLESLMSSNKGSSPLEKGAFSEGVPGYFGTNNLSSLGMDNGNNLFLLAKRMELERQRSLTNPYAFWPGIDATSKVSKPDISLDDPIQQAKLLSSIIDQSRQTAQSADMSAILQGLSDKAPPGISDVAGWSKFASQHASDPLQSKLDLHHDLNVPLQAPFGFQQQRLPPQMSLANVLAQATDNSTSTPDKFLPSSLSQDPQLISKLQQQHLLQLQSQVPFSAQQMSLLDKLLLLKQQQKQEEQQQLLQQQQLLSQVLSEHQSRQHFGDPAFGQLQGAPISIGNASIDPSQVQLSREQLQIGSQKPPNVLTDRATTFGNIALQVTQGANYNVNSEDPSLVVPHQMFGNVVQQKSWNAALPEQLNDIHPKDMLPGSKSNEDVNLVPTSFDSDTVKALEQISEDVPRVDATVTSIASDVSVEPLPLRNDEVSVARPPAEVRDIEIPVPISVPVVKVEDASTPVEKLERNVCKDDTSVETELKNVEAQEPRKSCDKKTKKQKSSKLLSSDQAKYSKNSAIQQSKQPKNGKPENDLKLKEDNLVGKSSDTSSSPQKTRDGDAKISHVDSQPASAWNDSVTDQVKYDTRLIGSDSGVNSQIQSCQRAWKVATSFKAKSLLEIQEEEQKRAHIEPAVSEISTAINSMSLSTPWAGVVSNLDPKASRETHKDSMNSEPIEKHENLLNLRSRKSQLHDLLAEDDMEKSGAGVVRVSDSIQIASSPQVVATQAEPMDDNFIEAKDTKKSRKKSAKAKGVGIKASSSVPSADVPVGSSPIEKVKISRQTQQEKDAMPAIPSGPSFGDFVLWKGEAANVAPAPAWSSDSGKFPKPTSLRDIQKEQERKISAAQHSHQIPTPQKAQPTQVGRSSSSSTPSRALSASSPSKVASSPLQNTPSQSKYGGDDDLFWGPIESKQENQQVDVHLGSHGSWGNRNTPAKAAAAASTGLLSRQKSSSGRADTASTGLLSRQKSSSGKADYLSPLPAQSSQKGKQDTVTKHSEAMDFCDWCERECARLLGTKDTSFLEFCLKQSRSEAELLLIENLGSYDPDHEFIDQFLNYKELLPADVLEIAFQSQNDRKVFAVAAREVNSGHAGRNLDPDAPVGGDGSAKGGGKKKGKKGKKVSPSVLGFNVVSNRIMMGEIQTVED 1845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2854769 2863930 + Carg04060-RA Car12g00452 158068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00452 1845 MobiDBLite consensus disorder prediction 1231 1245 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 374 560 - -
Car12g00452 1845 ProSiteProfiles GYF domain profile. 590 641 IPR003169 GO:0005515
Car12g00452 1845 MobiDBLite consensus disorder prediction 446 477 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 10 33 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 485 560 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 1644 1690 - -
Car12g00452 1845 Pfam GYF domain 593 631 IPR003169 GO:0005515
Car12g00452 1845 MobiDBLite consensus disorder prediction 1546 1598 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 1209 1230 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 1441 1501 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 70 226 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 405 424 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 1184 1281 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 1 282 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 1531 1545 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 1184 1208 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 1514 1607 - -
Car12g00452 1845 Coils Coil 945 965 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 375 396 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 425 440 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 1790 1822 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 247 282 - -
Car12g00452 1845 MobiDBLite consensus disorder prediction 1622 1693 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00452 - - - cmo:103487961 2802.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00194 Car12g00452 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00452 Car-Chr12:2854769 Car17g01309 Car-Chr17:9847877 9.42E-18 dispersed
Car12g00452 Car-Chr12:2854769 Car05g00194 Car-Chr5:1012245 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00452 Car_Chr12 FPKM 10.661967 9.823593 14.736094 15.493041 10.932987 14.930328 12.041555 13.676729 13.964239 13.060499