Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00454 ATGGGCGTTGCCCCGTTCCCCAATCAGATAGATGTTTGGATCCTCCCTAGTATTTCTTCTCTCTTCACTGAACTAACCCTAGATCTCCCTCCCGCCATTTTCTTCCGCTGGTCTGTCCTGCTAGATCTGCTTCAGATTCCGTTGTTTCTCAGCTCCGCCGCCGGCGATTCAGAGAGTTCTATCACTGGATACGCCTTATCTTGGCTCAAGAAGGAGAAGAATTATACTTATCCAATGGAGTTAAGAAGTTTCAGTCATTTTCATCATATCCATGCCATTAAAGGGGGTATGATGACTAAAGTTTTAAACATCAACCGTGGAAAGCCTGCAATGGTATTTAAGAAGCTTACTGACATATATGAATCTATATATGACAAAGCTCAAGAATCACTCCCAACACGATGGTCAAGAGAAGGTTTAGAAGGAAATATTCGTGATGGATGTGAATCGAAGATGGAAACCCAAGTTCTTTATGCAGAAAGAAAACTATTCAATGATGAGCCTGAAGTTTCTGATTCTGACCGTGAAGGTGATAGTGACACTGAAGGACAAAAGAGTGATGTAGAAGCTGATAGCATGACTATAAAGCAGATGATGGAAAGCTGCAAGAAAAGAAAAGTGAGGCAGTCAAATTCTGTTGACTCAAGCAAGGAAAAGCTGAGAACATGCTCCAGACGAGAATTAAATCATTCATGCTTGTTATCAGATGAGGATGATAGTGATCTTGATGTTGCTCTTAGCATCTGGCAATCCAAACTTTCAAAACGCAAAAAATTGAAAAACAAATGTGACGAAAGCAAAATATCTACTAGCTCACTGCACGGCCAAACAATTGAAAATTCTGATCCAATCAATATTGATCAGGATCTCCTTCCATCTAGTTCTGACCTAGCCATCCCAGTGGACATTAAAGTTGAAACTCCTGAAACTGATGTGACAGAAATCCAAAACACAAACTGCATTCCGGATGAGTTGTCTCTACTCTGTGATGAAAATGTAAACTCGTGTCTGAGTTCTGGGCCTATTGGAACCGATGAATTATTTTTCGGTCTAGAGTTGACAGCATCTGAGAAAGAAGCTGAATATGGAGTTCCAAACTGTGTATCTCTTGAAAATGTGGAAGGTGATGAATCCAGACCTCTTCAGATGGTAGGGGAATCTAGCACTGAGTGTGTGAGTGAAGATAACCTGGAGGTACACAAACCCCAACATTCAGATTTTCCGACATCAGAGACTATGGAGGGACAATGTACCCCAAGTTTTGTATCCAATGATAGCATATCAGAAGCTATTTCCCTGACTGAGGAGCAGTGCCTTGGCATTCATATGTCACAAGCTAAATCCATTACACACGAGGTCATATGTCAGAATAATAGTGAAGATATGTCAGCAATTTCCATGACCGGGGAACAGTTCTCTGACACTCATATTTCAGAAGGTAAACCCTTTACAGATGAGGCCATATGTCCGACTAATGGTGAAATCTTCACGTATTTGAATGGAATGGCTGATCTGAATAGCCTCCAACTCCCAGAGATGAGTCTTGGAGCTGAAGCACGTTTAACCGAGAATAGGTATAAAGACAGGTTGGCATTTGATAATGAAAAGGGCATTCCAACGGAATCTACCGGTGATTGTAACTTAAGCTCTGAACATGGGGGAAGGATTTCATCAAAATCTACCAGTGATTGTAACTTAAGCCCTGATCATGGAGAGAGTGTTTCAACAAATTCTATCAGTGATCGTAACTCCATTCCTGATCAGCATTTGATATCTATTGACGAATGTCCAGCTAAGGAGAAACAACCACAAATGTCTGATTGTTCTGATTCAGAAAGAAATACTTCACCAGATTTTCATCTCAATGGTTCTACGGATAAATTCAATCAAATTGAAGAAACTCAACGTCATCCAACAAGGCTGCTATCAACGAGAACAACCATTTCTCCAACATCTCAGGAAAGATTGTCCAAGGCTATGAAGTCTATGCAGTTACAAGATAAAGAATGCAAAACATGCGGTGGCAAACCATATTTCAAACAAATTAAGTACAAGGTTGGCACAGCTGAAGGGTGTGACCCGATGAAGAGAGTGTATTCCGATACATATCACGAGCAAAATACAAGGAAATCAAAGAAGAGAAGTCTTCACTCAACAAACACCACTAAAGCTTCTCATGCTCATGCTAGCATGAGAAGCTCTACCGTCCAGAGTTGTTCAGATAGTGCCATTGCATTCACAGAAAGACAGATGCAGGACATAGAGTGTCTTGCTCTGAAGCTTACAACTCAGTTAAAGTCAATGAAAGCAATTGTAGAAGACAGAATTCATGTCGAAGGCAACAAAGCTACAAGCTACAAGTTTAACACGGATGAGGTGAGAACAGCCATCGCCGATGCAACGAAAGCGGAAGCAAGTGCGAAGAAATGGCTTTCCATAATGTCGAGGGACTGTAACCGTTTTTGTAAAATAATGAAAACAAGTGGGCATGGTTCAAATGCTTCTCCAACTTCAGTTCAGAAGTTGAAGAGGAAGATTACATTTGCTGATGAAGCTGGTGGAGAGCTTTGTGAAGTTAGGTTGTTCGAGGACGACATGAACGCCGAGTCTTCCGTGGAAACCAGTCCCAAAAAA 2634 41.23 MGVAPFPNQIDVWILPSISSLFTELTLDLPPAIFFRWSVLLDLLQIPLFLSSAAGDSESSITGYALSWLKKEKNYTYPMELRSFSHFHHIHAIKGGMMTKVLNINRGKPAMVFKKLTDIYESIYDKAQESLPTRWSREGLEGNIRDGCESKMETQVLYAERKLFNDEPEVSDSDREGDSDTEGQKSDVEADSMTIKQMMESCKKRKVRQSNSVDSSKEKLRTCSRRELNHSCLLSDEDDSDLDVALSIWQSKLSKRKKLKNKCDESKISTSSLHGQTIENSDPINIDQDLLPSSSDLAIPVDIKVETPETDVTEIQNTNCIPDELSLLCDENVNSCLSSGPIGTDELFFGLELTASEKEAEYGVPNCVSLENVEGDESRPLQMVGESSTECVSEDNLEVHKPQHSDFPTSETMEGQCTPSFVSNDSISEAISLTEEQCLGIHMSQAKSITHEVICQNNSEDMSAISMTGEQFSDTHISEGKPFTDEAICPTNGEIFTYLNGMADLNSLQLPEMSLGAEARLTENRYKDRLAFDNEKGIPTESTGDCNLSSEHGGRISSKSTSDCNLSPDHGESVSTNSISDRNSIPDQHLISIDECPAKEKQPQMSDCSDSERNTSPDFHLNGSTDKFNQIEETQRHPTRLLSTRTTISPTSQERLSKAMKSMQLQDKECKTCGGKPYFKQIKYKVGTAEGCDPMKRVYSDTYHEQNTRKSKKRSLHSTNTTKASHAHASMRSSTVQSCSDSAIAFTERQMQDIECLALKLTTQLKSMKAIVEDRIHVEGNKATSYKFNTDEVRTAIADATKAEASAKKWLSIMSRDCNRFCKIMKTSGHGSNASPTSVQKLKRKITFADEAGGELCEVRLFEDDMNAESSVETSPKK 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2867960 2873082 - Carg04062-RA Car12g00454 158070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00454 878 MobiDBLite consensus disorder prediction 720 734 - -
Car12g00454 878 MobiDBLite consensus disorder prediction 532 586 - -
Car12g00454 878 MobiDBLite consensus disorder prediction 599 625 - -
Car12g00454 878 MobiDBLite consensus disorder prediction 166 192 - -
Car12g00454 878 MobiDBLite consensus disorder prediction 703 734 - -
Car12g00454 878 MobiDBLite consensus disorder prediction 540 586 - -
Car12g00454 878 MobiDBLite consensus disorder prediction 608 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00454 - - - cmax:111496554 1505.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00191 Car12g00454 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00454 Car-Chr12:2867960 Car05g00191 Car-Chr5:1005166 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g925 . . . . . . . . Cmo05g00238 . . . . Car12g00454 Sed11g1023 . Cpe07g00432 Bhi04g00263 Tan02g1945 Cmetu03g0909 . Hepe10g0655 . Lcy13g1998 Cla08g01502 Cam08g1992 Cec08g1567 Cco08g1704 Clacu08g1682 . Cre08g1465 . Cone7ag1815 . . . . . Cme03g01969 Blo17g00806 . Bda08g01290 . . . . Bma05g00112 . . . Cma12g00481 Cma05g00230 Car05g00191 . Cpe11g00191 . . . . . . . . . . . . . . . Lsi08g01407 Csa02g02038 Chy03g01474 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008634 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34