Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00456 ATGAAAATGAAGCTTGGATCCAAGAAATGGAAATCCATCGTCCCTCGTTTTAAAGGAAAATCATCAGCTCCCTCGTTTTCTCTAGTTTCCAAATCTAAGTCGGTTAAATATTGTCCAGACAAAACGCCGGTCTATCTAAATGTGTACGATTTAACCCCGATGAATGGTTATGTCTATTGGGCAGGCCTTGGTATCTTTCACTCTGGTGTAGAAGTCCATGGTGTAGAATATGCATTTGGAGCTCATGACTATCCAACCAGTGGCGTTTTTGAAGTTGAACCTCGACAATGCCCCGGCTTCAAATTCAGGAGGTCAATATTGATTGGCTCGACCTGCCTCAATCGTCATGAAGTCAGAGAGTTCATGGAGCAACGCTCTTCGAGCTACCATGGTGATACATATCACCTCATTGTCAAGAACTGTAATCATTTCTGCAAGGACGTCTGTCATCAATTGACTGGGAAATCAATTCCGAAATGGGTAAATCGACTCGCTAAAATAGGTACCTCTTCTGTTCCATTCCCTCTTAGAAGTGATTTTCCAGCTGAATCCGATCATCTTAATGCTCGTTCTATCGATTTGATTCCAAAAAGTTCCGTTTGTAATTGCATACTTCCCGACTCCCTTAGAATATCTGCCGTAAGACACGATCCCACTTTCCCACCATATGAGACCGAGAGGACGAAGCTGAGGAATGCTTCCAGTTGCTTGTCTACTATATCAAGTCAGCAGAAGCAGCTGTCTTCATCTTCATTATTTCTACGGTCGCCATCGAAAGGCTGGGAATTGAAGAAGCCGAACGGCGATCCCCCTCACGCCTCAAAGGATAGGGGAAGCTATAAGCTGGACGTAGTCGTTGTCGTCGTTCACTAA 873 44.22 MKMKLGSKKWKSIVPRFKGKSSAPSFSLVSKSKSVKYCPDKTPVYLNVYDLTPMNGYVYWAGLGIFHSGVEVHGVEYAFGAHDYPTSGVFEVEPRQCPGFKFRRSILIGSTCLNRHEVREFMEQRSSSYHGDTYHLIVKNCNHFCKDVCHQLTGKSIPKWVNRLAKIGTSSVPFPLRSDFPAESDHLNARSIDLIPKSSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQKQLSSSSLFLRSPSKGWELKKPNGDPPHASKDRGSYKLDVVVVVVH 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2884509 2890094 + Carg04064-RA Car12g00456 158072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00456 290 Pfam PPPDE putative peptidase domain 43 170 IPR008580 GO:0008233
Car12g00456 290 ProSiteProfiles PPPDE domain profile. 42 209 IPR008580 GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00456 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - csv:101219130 395.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00342 Car-Chr12:2154980 Car12g00456 Car-Chr12:2884509 4.05E-70 dispersed
Car12g00456 Car-Chr12:2884509 Car15g01011 Car-Chr15:7892995 1.51E-74 dispersed
Car11g01060 Car-Chr11:8187205 Car12g00456 Car-Chr12:2884509 4.87E-88 wgd
Car12g00456 Car-Chr12:2884509 Car02g00280 Car-Chr2:1900419 1.93E-97 wgd
Car12g00456 Car-Chr12:2884509 Car20g00753 Car-Chr20:4415036 6.71E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g904 . . . . . . . . . . . . . Car12g00456 Sed04g3587 . Cpe07g00435 Bhi04g00266 Tan02g0834 Cmetu01g1929 . Hepe02g0532 . Lcy13g2001 Cla08g01507 Cam08g1995 Cec08g1570 Cco08g1707 Clacu08g1685 . Cre08g1468 Cone4ag1896 Cone7ag1808 Cone17ag1325 Cone20ag0151 . . . Cme03g01972 Blo17g00810 Blo18g00822 Bda08g01294 Bda01g01488 Bpe02g01684 Bpe05g00082 Bma01g00768 . . . . Cma12g00485 . . . . . . . . . . . . . . . . . . . Lsi08g01411 Csa02g02035 Chy03g01478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000619 5 5 3 1 3 3 4 3 3 3 3 2 4 3 3 2 2 6 4 2 3 3 3 3 3 3 3 11 5 2 103
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00456 Car_Chr12 FPKM 14.457228 18.936571 18.006786 18.742243 35.994347 30.186817 32.745564 6.46808 6.201063 7.025933