Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00460 | ATGACCTCCGACGGGGCTACTTCTGCCTCTACTTGCCGCCGGAAGCCGTCATGGAGGGAGCGGGAAAATAATCGAACCAGAGAGCGGCGGAGGAGAGCTATTGCGGCCAAGATTTATGCCGGACTTAGGGCTCAAGGCAACTTCAACTTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGATGCTGGTTGGACTGTCGAAGATGATGGAACCACTTATCGGAAGGGATGCAAGCCACCTCCAATGAACATTGTTGGTACTTCCACTAGAATCACGCCCTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCTAGCCCTATGGCATCCTACCAAGTCAGCCCCTCCTCCTCCTCCTTTCCGAGCCCGTCCCGTCTGGACGCCGACAATCCATCGAACCTCATTCCCTATCTTCGCCAAGCAATTCCCAGATCACTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGAACTCCACAGCCATTCCTCAATTGGGAGGTCACTGCAAAGGAATCCTTCTCCTCCTTGAACTACCCTTTCTTTGCAGTATCTGCCCCTGCTAGCCCAACTCGCCCTCAGCTGCATACTCCCACCACGATCCACGAATGTGATGAGTCTGAATCATCCACCAACGCTTCCAATCAATGGGCATTTCTCCATGCCTATCCCCATTCCACATTGACAATGCCAACGTCTCCCACATTCAACCTTGTGAAGCCTGCTGACCAGCATGATCTGCAGGGAGGCTTCATCAAGGAAAATGGAAGAGGAAGTGAATTCGAGTTCTTGGGCCGTAAGGTTAAGCCTTGGGAAGGGGAGAAGATCCATGAAGTCGGATTGGAGGATTTGGAACTCACACTTGGTAGTAGCAGTAAGGCTTGA | 933 | 51.55 | MTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYAGLRAQGNFNLPKHCDNNEVLKALCADAGWTVEDDGTTYRKGCKPPPMNIVGTSTRITPYSSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDADNPSNLIPYLRQAIPRSLPPLRISNSAPVTPPLSSPASRTPQPFLNWEVTAKESFSSLNYPFFAVSAPASPTRPQLHTPTTIHECDESESSTNASNQWAFLHAYPHSTLTMPTSPTFNLVKPADQHDLQGGFIKENGRGSEFEFLGRKVKPWEGEKIHEVGLEDLELTLGSSSKA | 310 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2902675 | 2904490 | - | Carg04068-RA | Car12g00460 | 158076 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00460 | 310 | MobiDBLite | consensus disorder prediction | 14 | 29 | - | - | |
| Car12g00460 | 310 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 13 | 137 | IPR008540 | - | |
| Car12g00460 | 310 | MobiDBLite | consensus disorder prediction | 93 | 135 | - | - | |
| Car12g00460 | 310 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00188 | Car-Chr5:988134 | Car12g00460 | Car-Chr12:2902675 | 5.51E-154 | dispersed | |
| Car12g00460 | Car-Chr12:2902675 | Car13g00463 | Car-Chr13:6967221 | 1.59E-40 | dispersed | |
| Car12g00460 | Car-Chr12:2902675 | Car03g00704 | Car-Chr3:6143695 | 8.78E-87 | wgd | |
| Car12g00460 | Car-Chr12:2902675 | Car07g00444 | Car-Chr7:2261078 | 9.21E-90 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4409 | PF05687 | BES1_N | 3.70E-62 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00460 | K14503 | - | csv:101219853 | 489.574 |