Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00461 ATGGAGAATCGCTTAGCGAGAGATGAACTCTCTGTATTTTTGGAGTCTGGAATTTATCGCTTCCAGAATTCCAATTTCATTTTCGTTGATCCAGTTCGTGTTCTGAATCGTTCGTACTCACGGTTTAGGGTTTCTCCTGCTGGTTACTACCGACGATTCTTCGATCATGTGAAGAAGGGTTTGGATGACAAGGATTGTTTATTGAATGCGAGGAAGCGAAAGAGGAAGGAAAAGAAATCCCGCTGCTTAAACGAGAAAGAACTTGCTGCCGATCAACGCCACCAGGTGGCGAAGCCTTTGTTGCTTATGGCACACGAGTCGTTATTGCAGGCTACCGATCTGTTGAGCGTAATGGGCAGTTTAAACCGTGAGATTGATTCTTCAGCAGGAAGCAGATGGGTAGAATTACCGAATGATCATCAATCATTGATCGAACACGGAGGTGTTTGGCAGGCGCCTTTATATGAAATAACTCTCAAACTCCCTGAATCCAGTCCATCCAGTGAAGTTGCAGGATCCTCTTTCAAGAACAGAGTAGTTCCCTTGTTTAATAACCTGGTTGTCAATGAGACCTTGAATGAGGTTGAAGCTCAATTTCTTGATCATCAATATATATTGCCTCGCGAAAGTTGCTTCTACATGTCTGATTTGAGGATGGTTCACAATCTTATTCCTGCTACAGCTAGCTCTGGCTTCAGTCTTATTGTGATCGACCCACCGTGGGAAAATGGAAGTGCTCAACAAAAATCAAAGTATCCAACATTGCCAAACCGTTATTTCTTAGCTCTGCCTATTAAGAAACTGTCTCATAGCAAAGGAGCACTGGTCGCCTTGTGGGTGACGAACAGAGAAAAGTTTCATCGTTTTATCGATTTGGAATTGTTTCCTTCATGGGGAGTCACACACATTTCCACTTTTTACTGGTTAAAGGTCAAAGCAGATGCTTCGTTGATAAGTGATCTAGATCTCTTCCATCACAGGCCGTATGAATGTCTTCTCTTGGGCTATTGTCACGGTGAGGATGACATTGAAGACCTGAAAATTTTGGAGCAAACCGTACCCAAAGATCAAGTCATCATTAGCATTCCTGGCGATTACTCGAGGAAGCCACCAATTGGAGAGCTTCTGCAGGAGTACGTACCAGGGCCAACGCCGGGTCGCTGCATCGAACTGTTTGCTCGAGAGATGACTCCCGGATGGCTTTCTTGGGGGAACGAGCCCCTTCACTTCCAGGAATCGCAACACTTCACAAGGACATAG 1260 44.76 MENRLARDELSVFLESGIYRFQNSNFIFVDPVRVLNRSYSRFRVSPAGYYRRFFDHVKKGLDDKDCLLNARKRKRKEKKSRCLNEKELAADQRHQVAKPLLLMAHESLLQATDLLSVMGSLNREIDSSAGSRWVELPNDHQSLIEHGGVWQAPLYEITLKLPESSPSSEVAGSSFKNRVVPLFNNLVVNETLNEVEAQFLDHQYILPRESCFYMSDLRMVHNLIPATASSGFSLIVIDPPWENGSAQQKSKYPTLPNRYFLALPIKKLSHSKGALVALWVTNREKFHRFIDLELFPSWGVTHISTFYWLKVKADASLISDLDLFHHRPYECLLLGYCHGEDDIEDLKILEQTVPKDQVIISIPGDYSRKPPIGELLQEYVPGPTPGRCIELFAREMTPGWLSWGNEPLHFQESQHFTRT 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2906344 2910904 - Carg04069-RA Car12g00461 158077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00461 419 ProSiteProfiles MT-A70-like family profile. 190 419 IPR007757 -
Car12g00461 419 Pfam MT-A70 232 406 IPR007757 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00461 - - - csv:101220088 702.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g895 . . . . . . . . . Cmo12g00436 . . . Car12g00461 Sed10g1327 . Cpe07g00439 Bhi04g00272 Tan02g1934 Cmetu03g0596 . Hepe10g0667 . Lcy13g2005 Cla08g01511 Cam08g2000 Cec08g1576 Cco08g1712 Clacu08g1690 . Cre08g1473 . . Cone17ag1324 . . . . Cme03g01976 . Blo18g00824 . . Bpe02g01682 . Bma01g00770 . . . . Cma12g00490 . . . . . . . . . . . . . . . . . . . Lsi08g01415 Csa02g02031 Chy03g01482 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010547 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00461 Car_Chr12 FPKM 10.054301 9.752401 2.728006 3.626639 2.939967 4.262069 3.757083 0.0 1.380543 0.0